PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0122.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 549aa    MW: 59024.5 Da    PI: 5.063
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0122.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-17141193456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++++ +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k
  Sphfalx0008s0122.1.p 141 KRRLNFDQVKSLEKNFELENKLEPERKIQLAKELGLQPRQVAVWFQNRRARWK 193
                           4466779*********************************************9 PP
2HD-ZIP_I/II115.33.7e-37139230192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ +qvk+LE++Fe e+kLeperK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy++L   y++lk++ e++ +e++eL++
  Sphfalx0008s0122.1.p 139 EKKRRLNFDQVKSLEKNFELENKLEPERKIQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYQVLSLDYNRLKNQLEAVLQEKQELQA 227
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           +++
  Sphfalx0008s0122.1.p 228 KVQ 230
                           987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-19127197IPR009057Homeodomain-like
PROSITE profilePS5007117.167135195IPR001356Homeobox domain
SMARTSM003893.3E-14138199IPR001356Homeobox domain
CDDcd000863.07E-16140196No hitNo description
PfamPF000466.8E-15141193IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-18143202IPR009057Homeodomain-like
PRINTSPR000312.0E-5166175IPR000047Helix-turn-helix motif
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
PRINTSPR000312.0E-5175191IPR000047Helix-turn-helix motif
PfamPF021835.6E-11195234IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MGAMDYNLQC PVPGTAVCFQ PADQMMANTV AGSRSSFGAI GTPNMQQMLM PSDQSSSTDT  60
LVAMLASYSP AASAALQASL SSGRLEDIAL VGCGQMRPSF LQYPASAYED SYLDEDQAPA  120
GDDDSAGDVS AAGHNNYVEK KRRLNFDQVK SLEKNFELEN KLEPERKIQL AKELGLQPRQ  180
VAVWFQNRRA RWKTKQLERD YQVLSLDYNR LKNQLEAVLQ EKQELQAKVQ CLTTAKAAGQ  240
EPSAKEERST GRVEEAAATT GLVDHHVLQS CKLEGLAMAP DVQTALRRSN SKSCNIAVDS  300
SQLNVKPDDQ YNSSKDADVD QVLISTTRDH VKKNRLKRAA GSRTNFAAAA VADADQAATT  360
AAPAVTPSPT LARKTRNMND GSPSSASTYS SDILDAEDSP HGTINSCTEL VSRNLTSASS  420
ISMRAAADSQ IRVQEHHPSH GVLDRYYQVT DQNLHYAGRV MNTFPHYEAE AEAALYNNVL  480
VGPRCTSTSV VKLEDVQVAA ASSAVFQEAA AADIAACNYL LAAAQVQEEH GGGGGGGGGA  540
LEPWWDWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187195RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-26homeobox 1