PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0078.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 1032aa    MW: 110175 Da    PI: 7.7764
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.6e-17387487199
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ 
  Sphfalx0008s0078.1.p 387 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLKIQDVTGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMRLQAGDTVTFSRL 474
                           89**************************555556678***************9989999999***9.********************76 PP

                           SSSEE..EEEEE-S CS
                    B3  86 grsefelvvkvfrk 99 
                           +  +++lv++ +r+
  Sphfalx0008s0078.1.p 475 E-ADGKLVMGYRRA 487
                           5.677778877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.2E-42364IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF1019363.53E-19384486IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-28384487IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-22385486No hitNo description
SMARTSM010191.5E-19387487IPR003340B3 DNA binding domain
PROSITE profilePS5086311.124387488IPR003340B3 DNA binding domain
PfamPF023621.0E-14387487IPR003340B3 DNA binding domain
PROSITE profilePS5105013.403616666IPR011124Zinc finger, CW-type
PfamPF074961.1E-11621663IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MREEDGLEAA AVEVPAAAAA AAARQVCWNT KCGSSGSSKW RPGWVLRAGN TAYLCDSCGL  60
AYEQFRFCET FHSDDAGWRT CNSCKKRVHC GCIASVYGLV LLDKGGVECS GCAQQDDVVA  120
SSSMVGKHGQ QLLAKEAHTR GKGEDPTDRR QCEGLALAAC QSEPGPWQPP SSAACAAPLT  180
NAAVHPAPWD SSLKGEQLNG SQAFGTKSQE QEVAISDLEP HVHNLDSSKV GSRAHSPNAA  240
REGTDGRGME SPGHVESSSP SPKSGTEMPS TGLIVSGRSS PAKEVSGEAS QQQQGGLETG  300
PAGELGDGKT TGFYRPPRVQ QLLPRPAISG PSAEPGFDPQ APLRVARPPG EGRGRNQLLP  360
RYWPRITDQE LQQITSGDTN TVITPLFEKM LSASDAGRIG RLVLPKACAE AYFPPIHQPE  420
GLPLKIQDVT GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MRLQAGDTVT FSRLEADGKL  480
VMGYRRAPSS LSSQDAGATG GTMTSNGLPG ANYVAPQIVD GWAGKGGSAK LKDSTLALTT  540
QLDRKRGRPL GSKSKRLRFD TDDALLLKSS WEEAQELLRP PPLAVPTKIT IDGHEFEEYS  600
EPPVFAKKTF LSITPSGEHD QWAQCDECGN WRRLPFEAVI HSHWSCSQNT WDLKRASCSA  660
PQEVSNEKLE VILRQASGQE GGKQGSASRT MLVATVGGDL ITTTAVGLDT LAQVAATSSP  720
VSPMRTTKHP RHRPGCSCIV CIQPPSGKGP KHKATCTCNV CVTVKRRFKT LMQRRKKRQF  780
ERESELARKK RGWPHDDVSD SASLLDAASR PETSGGAVGE ENPTTPLVYQ SDVGVEEGPG  840
KAAIDLNSQP DRGGERVSMV RMVQDAGKPL STYLHQQHLM TLCGLDPLSD KVSEEPSSSP  900
DEVASQTSSR AHADSDVQVP AAMSVQVQQP QSPFVVDIAE PSGHMEPWDP RAGKPAEPSG  960
DSVHSSSSKQ DYGMLNQLAG SNTPAKKYAA GAGRGRQICS GCGEPIGSAA KVCRRCGTST  1020
AFGKKKRGVP P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-623644902127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1764776KRRFKTLMQRRKK
2764777KRRFKTLMQRRKKR
3775790KKRQFERESELARKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380837.10.0B3 domain-containing protein Os07g0679700-like isoform X3
TrEMBLA0A2K1JVP00.0A0A2K1JVP0_PHYPA; Uncharacterized protein
STRINGPP1S31_242V6.10.0(Physcomitrella patens)
STRINGPP1S42_132V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-161HSI2-like 1