PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0056.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 402aa    MW: 43556.8 Da    PI: 7.7562
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927e-292103197
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++ +++a+p+ +r+++++sl+yeA+ r+ +Pv Gavg++++++
  Sphfalx0008s0056.1.p   2 SCNGCRVLRKGCSDSCILRPCLqwienADAQGHATVFVAKFFGRAGLMGFISAVPDGQRPALFQSLLYEACGRTVNPVFGAVGLLSTGN 90 
                           6*********************9998666789********************************************************* PP

                DUF260  85 qqleqlkaelall 97 
                           ++l+++++e++l+
  Sphfalx0008s0056.1.p  91 WHLCREAVETVLR 103
                           *******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.7771107IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-242100IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDSCILR PCLQWIENAD AQGHATVFVA KFFGRAGLMG FISAVPDGQR  60
PALFQSLLYE ACGRTVNPVF GAVGLLSTGN WHLCREAVET VLRGGTLQPP PLRLLSSSLP  120
PGFMNTTGLE KSVVAKEMQE SRIPSVVPLH PPPQLFSHEC YKPRSFEVGF LDRNLQQAWG  180
LEEQQYNNVH SGMRGDLNGN KGRVQELQQH RMMQGNALHL STWPRAIRVS LYPSKDQTCS  240
EVKDEQALGL SYKHRDVREV GMEQPEAVGP HSTLVLAPVA RRVKPRLSAE EHATGNQLSK  300
LEPQEIPAGG LGLNDGGGGN QPELELNLTL KVKDAKGDSP AAGPQVSSPS CESVISEGSV  360
TSHSSQLVPL QPPSTSWALE RPFPAVVLPP PLHHKLLPLL L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-65LOB domain-containing protein 37