PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0008s0026.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARR-B | ||||||||
Protein Properties | Length: 537aa MW: 59172.9 Da PI: 5.1707 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.2 | 2.1e-29 | 203 | 256 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+peLH++Fv+av+qL G+ekA+Pk+il++m+v+gLt+e+v+SHLQkYRl Sphfalx0008s0026.1.p 203 KARVVWSPELHKQFVQAVNQL-GIEKAVPKRILDVMNVQGLTRENVASHLQKYRL 256 68*******************.********************************8 PP | |||||||
2 | Response_reg | 83.8 | 5.3e-28 | 32 | 140 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl+vdDepl +++l ++l++ +y +v+++ ++eal ll+e++ +Dl++ D+ mp+mdG++ll+ i e +lp+i+++a ge +++ Sphfalx0008s0026.1.p 32 VLVVDDEPLCLMILDRMLRQCKY-NVTTCNLATEALSLLRENRnyFDLVISDVYMPDMDGFKLLEAIGLEL-DLPVIMMSAVGETDLVM 118 89*********************.***************999999**********************5544.6**************** PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 + + Ga d+l Kp+ eel++ Sphfalx0008s0026.1.p 119 KGITHGACDYLLKPVRLEELRN 140 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.69E-38 | 28 | 159 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.5E-42 | 29 | 166 | No hit | No description |
SMART | SM00448 | 1.3E-30 | 30 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.994 | 31 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.9E-25 | 32 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.07E-28 | 33 | 146 | No hit | No description |
PROSITE profile | PS51294 | 11.19 | 200 | 259 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.38E-20 | 201 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-30 | 202 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-25 | 203 | 256 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-8 | 205 | 255 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MDMSGGGDLA WTQRNKTEMA IPLGTFPEGL RVLVVDDEPL CLMILDRMLR QCKYNVTTCN 60 LATEALSLLR ENRNYFDLVI SDVYMPDMDG FKLLEAIGLE LDLPVIMMSA VGETDLVMKG 120 ITHGACDYLL KPVRLEELRN IWQHVIRRRV PVKDLHREEG SGEWDDSAYP HDSTADTDHS 180 FRKRKERVDD EIQRAEDLNN LKKARVVWSP ELHKQFVQAV NQLGIEKAVP KRILDVMNVQ 240 GLTRENVASH LQKYRLYLKR LSGVNPQPYP VASFQAAKNG SSGGVMQIQP GGRAAASSSS 300 GSKGWILGGV GLGRNVVQKD TVDRGSLQAQ LQQKHQQQQL ARTFEGLNQP TRDVAFTDLQ 360 RMGSNDLDLL MKTEYDASGQ PLDIANDQLP VLGNLNVLEQ FDLSGLIDLR EGENPVTMSN 420 LGTMSTHNNL NAITMENLRR AEDMGSLTSL KPGNGLAGGL GFGRPRGGDD WAPLESTGLA 480 EHLALRKFGG EFTSASCFSS VDTSSHEGIS ETSFKDYNDF GGPSDLLTPP HDLPLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-22 | 203 | 259 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388632.1 | 1e-161 | two-component response regulator ORR21-like isoform X1 | ||||
Swissprot | B8B3I4 | 2e-96 | ORR22_ORYSI; Two-component response regulator ORR22 | ||||
Swissprot | Q5SML5 | 2e-96 | ORR22_ORYSJ; Two-component response regulator ORR22 | ||||
TrEMBL | A0A2K1JVL4 | 1e-160 | A0A2K1JVL4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S31_291V6.1 | 1e-161 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 4e-97 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0008s0026.1.p |
Publications ? help Back to Top | |||
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