PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0008s0020.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Nin-like

Protein Properties

Length: 1139aa MW: 123947 Da PI: 6.2356

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0008s0020.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.9e-28	797	847	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++ l++l++yF++++kdAA+++gvc+T+LKriCR++GI+RWP+Rki+++ Sphfalx0008s0020.2.p 797 EKTVALSVLQQYFAGSLKDAARSIGVCPTTLKRICREHGISRWPSRKINKV 847 7999*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.62	781	867	IPR003035	RWP-RK domain
Pfam	PF02042	8.7E-25	800	847	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.29E-18	1029	1114	No hit	No description
PROSITE profile	PS51745	18.398	1032	1114	IPR000270	PB1 domain
SMART	SM00666	9.6E-14	1032	1114	IPR000270	PB1 domain
Pfam	PF00564	5.7E-13	1033	1112	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.1E-19	1033	1112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1139 aa Download sequence Send to blast
MDVSQANERN ILQSCIPQWR SADFKAFGQQ QLSPPPPRGG GVSSSYSAGG GGECKLEIMD 60 DTMILCELMD FDPLPGEAWI MANNQTDLSA PFMNSSQSLF ASAAATSCPP CGTVINSTYL 120 LEALDEQSPA ILAQQGEPQA ALCSETRLPS PEFTDSYFSP RGSDIGSFLS SQMPRTDEKT 180 EKTVSEAKLC RGLTRPAKGC ADQGPDGRHC FETESFIDSK STLVQCSKQG TDGNPGRRRG 240 PALTPEGRMT RSGRTDSAPF SLRDRLLQAV RYIGRCRPDV LAQVWMPVTH ANKTTCLTTR 300 DQPYVLELKN HQLWSFRSVS EKYDFPTAAD KESAAGGGGG GRGGGFSCDL PGRVFLSQAP 360 EWTPNVQLYS SNEYVRVQEA QRYDVRGTAA VPVLDPVSRR SLAVIELVSK SEKVEFRPEI 420 DVVCKALQAV DLACPDGLDP AVPGEMRLQS RQAVVAEIAE VLTAVCETHE LPLAQTWVPV 480 SQYGNAKVIV HNDSNRVQFD VDETCNCHTS SSKSTMSLHT GDGPCYVSDG HLWGFRRACL 540 EHTIERGQGV PGKAFSSNQP VFDKDVKSYS KTEYPLGHYA KWFGLSAAVA IRLRSIHTGN 600 DDFILEFFLP PSCVESQQQQ LILNSLSITL QHVCRSLRTV TDQELEEEQE AVAVAVDTEA 660 NCKPLKLCSA KEEQDVDLVP GCGLGPATPV LTHKVSPSSL DQQHHQQRLH LQTREHPVQY 720 QHQLDHHLGN TETNDLIQNQ EPSQLQQVQQ SYQSNQLSLG AVGAGVTNMG CAFASTCSGQ 780 DATIHKRRLD RRRGMTEKTV ALSVLQQYFA GSLKDAARSI GVCPTTLKRI CREHGISRWP 840 SRKINKVSRS LRKLQGVIDS VQGANGILHI NTLMGNNASV AGVTGIHIEK DHPPVHGNWS 900 VSLATHFPID SDFNKEHLVT SQTPADLLKV AQGEENKNPR CIPGACTFTA LRAGQLSGDR 960 EQRPASPSNY AFGEGGDEGK DGAGCPGLSA FDPRQFDASP GHGISDCSSP SSGIGDTTKK 1020 IIWPQRIDTT SAITVKATVG TDTVRFKFPS GSGYLDLRDH IQCRLKLESR SFDLKYLDDD 1080 EEWMLLASEA DLQECLQVTQ GTQQRAIKLL VQCSTGSGSC ITSSISTNVE EKPSKMSS*

Sequence ? help Back to Top

Protein Sequence Length: 1139 aa Download sequence Send to blast

MDVSQANERN ILQSCIPQWR SADFKAFGQQ QLSPPPPRGG GVSSSYSAGG GGECKLEIMD  60
DTMILCELMD FDPLPGEAWI MANNQTDLSA PFMNSSQSLF ASAAATSCPP CGTVINSTYL  120
LEALDEQSPA ILAQQGEPQA ALCSETRLPS PEFTDSYFSP RGSDIGSFLS SQMPRTDEKT  180
EKTVSEAKLC RGLTRPAKGC ADQGPDGRHC FETESFIDSK STLVQCSKQG TDGNPGRRRG  240
PALTPEGRMT RSGRTDSAPF SLRDRLLQAV RYIGRCRPDV LAQVWMPVTH ANKTTCLTTR  300
DQPYVLELKN HQLWSFRSVS EKYDFPTAAD KESAAGGGGG GRGGGFSCDL PGRVFLSQAP  360
EWTPNVQLYS SNEYVRVQEA QRYDVRGTAA VPVLDPVSRR SLAVIELVSK SEKVEFRPEI  420
DVVCKALQAV DLACPDGLDP AVPGEMRLQS RQAVVAEIAE VLTAVCETHE LPLAQTWVPV  480
SQYGNAKVIV HNDSNRVQFD VDETCNCHTS SSKSTMSLHT GDGPCYVSDG HLWGFRRACL  540
EHTIERGQGV PGKAFSSNQP VFDKDVKSYS KTEYPLGHYA KWFGLSAAVA IRLRSIHTGN  600
DDFILEFFLP PSCVESQQQQ LILNSLSITL QHVCRSLRTV TDQELEEEQE AVAVAVDTEA  660
NCKPLKLCSA KEEQDVDLVP GCGLGPATPV LTHKVSPSSL DQQHHQQRLH LQTREHPVQY  720
QHQLDHHLGN TETNDLIQNQ EPSQLQQVQQ SYQSNQLSLG AVGAGVTNMG CAFASTCSGQ  780
DATIHKRRLD RRRGMTEKTV ALSVLQQYFA GSLKDAARSI GVCPTTLKRI CREHGISRWP  840
SRKINKVSRS LRKLQGVIDS VQGANGILHI NTLMGNNASV AGVTGIHIEK DHPPVHGNWS  900
VSLATHFPID SDFNKEHLVT SQTPADLLKV AQGEENKNPR CIPGACTFTA LRAGQLSGDR  960
EQRPASPSNY AFGEGGDEGK DGAGCPGLSA FDPRQFDASP GHGISDCSSP SSGIGDTTKK  1020
IIWPQRIDTT SAITVKATVG TDTVRFKFPS GSGYLDLRDH IQCRLKLESR SFDLKYLDDD  1080
EEWMLLASEA DLQECLQVTQ GTQQRAIKLL VQCSTGSGSC ITSSISTNVE EKPSKMSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397373.1	0.0	protein NLP1-like isoform X1
Refseq	XP_024397374.1	0.0	protein NLP1-like isoform X2
STRING	PP1S250_18V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-81	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Sphfalx0008s0020.2.p