PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0007s0289.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 288aa MW: 33939.8 Da PI: 6.6062 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 80.4 | 2.6e-25 | 41 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+ +e+++ i++r e+e+++ ++k++k+lWe +++km+e+gf+rs+ qCk+kw+nl +ryk +++e ++ ++cp+f++l+a Sphfalx0007s0289.2.p 41 QWSYHETKEFIAVRAELEKDFTQTKRNKTLWELIAAKMKEKGFRRSADQCKCKWKNLVNRYKGKETNEPDN----GKQCPFFEELDA 123 7**************************************************************99999984....668******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 4.64E-26 | 40 | 105 | No hit | No description |
Pfam | PF13837 | 6.4E-24 | 41 | 124 | No hit | No description |
PROSITE profile | PS50090 | 7.282 | 42 | 98 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MGENLAVMAM LPMQTSPEVG GGDLGSLTAG KRSKKEDRIP QWSYHETKEF IAVRAELEKD 60 FTQTKRNKTL WELIAAKMKE KGFRRSADQC KCKWKNLVNR YKGKETNEPD NGKQCPFFEE 120 LDAIFKERAK SMDRMLLEAE AGSRPRKKGK RGKRSSDDDS DDDDDDDDSE DERIVGRKSR 180 KSEKGQRVTA EKFRANSMQE VLEDFFQQQQ RAEENWHDAM ERREQERRMR EQEWRDAMEK 240 LEQERITREQ GWREREEQRR AREEARAQKR DELFAALLSK LAQEDGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 1e-11 | 38 | 112 | 3 | 77 | DNA binding protein GT-1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381970.1 | 1e-112 | trihelix transcription factor GT-3b-like | ||||
TrEMBL | A0A176VZJ2 | 1e-120 | A0A176VZJ2_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W406 | 1e-120 | A0A2R6W406_MARPO; Uncharacterized protein | ||||
STRING | PP1S285_47V6.1 | 1e-111 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 2e-37 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0007s0289.2.p |