PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0007s0289.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 298aa    MW: 35122 Da    PI: 5.5134
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0007s0289.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.25.4e-2441133187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik......egekkrtsessstcpyfd 83 
                           +W+ +e+++ i++r e+e+++ ++k++k+lWe +++km+e+gf+rs+ qCk+kw+nl +ryk  +      eg++ +++++ ++cp+f+
  Sphfalx0007s0289.1.p  41 QWSYHETKEFIAVRAELEKDFTQTKRNKTLWELIAAKMKEKGFRRSADQCKCKWKNLVNRYKGKEtfdpdyEGKETNEPDNGKQCPFFE 129
                           7*************************************************************998333322233344588999****** PP

              trihelix  84 qlea 87 
                           +l+a
  Sphfalx0007s0289.1.p 130 ELDA 133
                           *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.68E-2640105No hitNo description
PfamPF138372.0E-2041134No hitNo description
PROSITE profilePS500907.2824298IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGENLAVMAM LPMQTSPEVG GGDLGSLTAG KRSKKEDRIP QWSYHETKEF IAVRAELEKD  60
FTQTKRNKTL WELIAAKMKE KGFRRSADQC KCKWKNLVNR YKGKETFDPD YEGKETNEPD  120
NGKQCPFFEE LDAIFKERAK SMDRMLLEAE AGSRPRKKGK RGKRSSDDDS DDDDDDDDSE  180
DERIVGRKSR KSEKGQRVTA EKFRANSMQE VLEDFFQQQQ RAEENWHDAM ERREQERRMR  240
EQEWRDAMEK LEQERITREQ GWREREEQRR AREEARAQKR DELFAALLSK LAQEDGY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356666.11e-116trihelix transcription factor GT-3b-like isoform X2
TrEMBLA0A176VZJ21e-122A0A176VZJ2_MARPO; Uncharacterized protein
TrEMBLA0A2R6W4061e-122A0A2R6W406_MARPO; Uncharacterized protein
STRINGPP1S301_41V6.11e-115(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.14e-35Trihelix family protein