PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0007s0223.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 491aa    MW: 54136.3 Da    PI: 5.1622
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0007s0223.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.91.1e-12224322186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikegekkrtses 75 
                           +W++  + +L++a  ++ ++l rg+   + W+++++++                +g  ++ +qC+ k +nl+kryk ++e ++   ++ 
  Sphfalx0007s0223.1.p 224 EWSEGATTVLMQAFGDKYRALDRGNFTSKIWADIAARVnaheitstgldggsVGEGPPKTREQCRIKVDNLKKRYKVEREKQRVSGCTF 312
                           5*************************************************9999999************************99988888 PP

              trihelix  76 sstcpyfdqle 86 
                           s ++p+fd +e
  Sphfalx0007s0223.1.p 313 S-KWPFFDMME 322
                           7.9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-17224324No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MRMMLMMMQH PVVETLDGSS SDEQHVVVGR MEMGPEIVPR LLEDNNGTNR VLYGQKMIVD  60
EEEDEGEEEE EEGGRGGGEE DHGGVHQLLS RNAHKLQLLQ QHGYENHHHT GQQIAATNGE  120
EEEEDHQHHN GDDVYGVRSG QQHRQHEDEE EDEEPKLGEL GSVMLRLDSG NNLGESITGR  180
ERPPPAIDGD IGIVQQSPHH PDTSSGGGGG KSGRGRTSRE PAIEWSEGAT TVLMQAFGDK  240
YRALDRGNFT SKIWADIAAR VNAHEITSTG LDGGSVGEGP PKTREQCRIK VDNLKKRYKV  300
EREKQRVSGC TFSKWPFFDM MEELIGSNPR LMRGGVVGLG GRGGMDSPGL ALEIVGQPGA  360
VRSSMQEGER MYYLEASAGG GEGDQTSQTL PKLSPILARG KRKRALKDFE RRNVNAPSLM  420
ALFARYNIPG IIIEAMLQED MDENTLINTK DIAVLIDQLQ TKHRLQIKLG HAERIKQAIE  480
DAREKKQTAG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388933.11e-134uncharacterized protein LOC112288694
TrEMBLA0A2K1JT631e-133A0A2K1JT63_PHYPA; Uncharacterized protein
STRINGPP1S39_263V6.11e-135(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-18Trihelix family protein