PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0007s0206.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

CPP

Protein Properties

Length: 1103aa MW: 118536 Da PI: 6.9287

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0007s0206.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.3	4e-15	640	678	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag +C +C C +C Nk e Sphfalx0007s0206.1.p 640 CKRCNCKKSKCLKLYCECFAAGIYCVGSCACRECLNKPE 678 89**********************************975 PP
2	TCR	51	2.8e-16	724	762	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+CkN Sphfalx0007s0206.1.p 724 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCKNM 762 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.6E-13	638	679	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.525	639	764	IPR005172	CRC domain
Pfam	PF03638	3.9E-11	641	676	IPR005172	CRC domain
SMART	SM01114	1.6E-18	724	765	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.2E-12	726	762	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1103 aa Download sequence Send to blast
MVTRGGGRRC GGEKSKEVDG AKDIGSPDRR DPIAASNHQE SPLFKYLCNL SPIKPLKAVH 60 VAHTYNELTF PPEPRIFASP RSTQRASSSS LKRVVVSERE IKSQFANIRQ VVKASPQDAA 120 VPKFEKVAEF NEDHSARLWM YEEQAEASLR AKFLQDFPPE MVDSVSVVIN DQVSESCDGG 180 LKRSSALDSG YCDHHLSVRH GGEAELDQHT TAMAYLLAGD QDFEPQDRED DWSEDSLEGS 240 RVSACRTSKY PTALKDDFCE DVNVDMNTQL ANEGSVLQDQ SMVLSHTVNP SGQHRGFRRR 300 CLDFDTSVAR GKNLDTGRRS VRRRQSIADV SPSVTSASAV VSCERASAAV DATMSGFSMS 360 MSDLLNAKEC SQAMFNSSAP ATGTVGLGCN GSAGAASGLL QVSGCCNTAG LEPSSVSGCS 420 GAPVCRTQDL SKCEGGNHTF NESSNQGCNP LVMPSGIGLH LNSLTSSISF KRDFHSTRVG 480 NSEGTLASIL GVEPLKSASL KGDQSDVCAQ VGMGNEGTPV IASQSFGSGV ASSSQRSQTG 540 KQFSESLLGN NSLKVDTLDF PSLDHESYGP PEGSLSVTGG DAMAGCRSII GQTGLQEQQT 600 DLFHQSEVET PEEFLDSPQS FKKRRRKSTV ASGDKSGEGC KRCNCKKSKC LKLYCECFAA 660 GIYCVGSCAC RECLNKPEFE ETVLNTRQQI ESRNPLAFAP KIVQAAETSP TPGEDSMDTP 720 ASARHKRGCN CKKSLCLKKY CECYQAGVGC SEGCRCEGCK NMYGRKEGSR EEEEKDGNQV 780 FTMQEEPQAD DPIELLNRMS GKSEQFRSSG NKNISPITPS FENDGMGLRS ASRKRAPHDE 840 HCSSPLLHQA GSRPSKFPTW FSNTLDGFQL AAYSQGAMEL SMSGGGESPM TTMNLSRIGH 900 LSPQWEGLAD ICTLTPLPMA PPRPTPTSVT TLDRSGFSPC FSSQLIDPSC NGGSSATRHN 960 HSLGKLLRRS PPRFRQPAAR SPLNFKTQQD RCNQNQSLAS THLSQEHSQG GKHNALSINS 1020 SGEDDDIHDS LRCPEVASPL QTTITKSGSP NQKRVNPPRQ GGSLEQGPSK AGGGMVMSSS 1080 PGLRSSCKFT LQKCNTTSYI SP*

Sequence ? help Back to Top

Protein Sequence Length: 1103 aa Download sequence Send to blast

MVTRGGGRRC GGEKSKEVDG AKDIGSPDRR DPIAASNHQE SPLFKYLCNL SPIKPLKAVH  60
VAHTYNELTF PPEPRIFASP RSTQRASSSS LKRVVVSERE IKSQFANIRQ VVKASPQDAA  120
VPKFEKVAEF NEDHSARLWM YEEQAEASLR AKFLQDFPPE MVDSVSVVIN DQVSESCDGG  180
LKRSSALDSG YCDHHLSVRH GGEAELDQHT TAMAYLLAGD QDFEPQDRED DWSEDSLEGS  240
RVSACRTSKY PTALKDDFCE DVNVDMNTQL ANEGSVLQDQ SMVLSHTVNP SGQHRGFRRR  300
CLDFDTSVAR GKNLDTGRRS VRRRQSIADV SPSVTSASAV VSCERASAAV DATMSGFSMS  360
MSDLLNAKEC SQAMFNSSAP ATGTVGLGCN GSAGAASGLL QVSGCCNTAG LEPSSVSGCS  420
GAPVCRTQDL SKCEGGNHTF NESSNQGCNP LVMPSGIGLH LNSLTSSISF KRDFHSTRVG  480
NSEGTLASIL GVEPLKSASL KGDQSDVCAQ VGMGNEGTPV IASQSFGSGV ASSSQRSQTG  540
KQFSESLLGN NSLKVDTLDF PSLDHESYGP PEGSLSVTGG DAMAGCRSII GQTGLQEQQT  600
DLFHQSEVET PEEFLDSPQS FKKRRRKSTV ASGDKSGEGC KRCNCKKSKC LKLYCECFAA  660
GIYCVGSCAC RECLNKPEFE ETVLNTRQQI ESRNPLAFAP KIVQAAETSP TPGEDSMDTP  720
ASARHKRGCN CKKSLCLKKY CECYQAGVGC SEGCRCEGCK NMYGRKEGSR EEEEKDGNQV  780
FTMQEEPQAD DPIELLNRMS GKSEQFRSSG NKNISPITPS FENDGMGLRS ASRKRAPHDE  840
HCSSPLLHQA GSRPSKFPTW FSNTLDGFQL AAYSQGAMEL SMSGGGESPM TTMNLSRIGH  900
LSPQWEGLAD ICTLTPLPMA PPRPTPTSVT TLDRSGFSPC FSSQLIDPSC NGGSSATRHN  960
HSLGKLLRRS PPRFRQPAAR SPLNFKTQQD RCNQNQSLAS THLSQEHSQG GKHNALSINS  1020
SGEDDDIHDS LRCPEVASPL QTTITKSGSP NQKRVNPPRQ GGSLEQGPSK AGGGMVMSSS  1080
PGLRSSCKFT LQKCNTTSYI SP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-17	641	762	12	121	Protein lin-54 homolog
5fd3_B	4e-17	641	762	12	121	Protein lin-54 homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	621	626	KKRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	6e-61	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Sphfalx0007s0206.1.p