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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Sphfalx0007s0146.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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| Family | LBD | ||||||||
| Protein Properties | Length: 319aa MW: 35071.6 Da PI: 9.9535 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 113.3 | 1.7e-35 | 6 | 95 | 1 | 89 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C aCk+lrrkC+++Cv+apyf aeq ++kfa+vhk+FGasnv kll ++p +r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++
Sphfalx0007s0146.1.p 6 PCGACKFLRRKCVRGCVFAPYFGAEQgAAKFAAVHKIFGASNVAKLLLHIPLPRRCDAVITISYEAQARLSDPVYGCVATIFALQQQVHK 95
7***********************9989***********************************************************987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 20.685 | 5 | 107 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 1.1E-34 | 6 | 95 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 319 aa Download sequence Send to blast |
MSSGAPCGAC KFLRRKCVRG CVFAPYFGAE QGAAKFAAVH KIFGASNVAK LLLHIPLPRR 60 CDAVITISYE AQARLSDPVY GCVATIFALQ QQVHKSFLST RQLAMVQAAN RQAAAAAAAL 120 VQQHHHQHLQ QQLLIQQTTG AAGVMQLQEA AHQPTHEIIM SPAHLPNISI MSGSSTRAGQ 180 GNTIMYANRS SIKEENINMQ QQQQQQAHQM QQQQYVTEIA AGISNPSSSS HGQLRSLMNT 240 DQSNFHKFQI PPRHRDPRDH QQLQQHDPAA TQLREHHHHH RHQITSDHQG RSAGAAAPGA 300 DHQLMMSHET FASLLPRK* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 4e-35 | 2 | 95 | 7 | 99 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 4e-35 | 2 | 95 | 7 | 99 | LOB family transfactor Ramosa2.1 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G03760.1 | 4e-51 | LOB domain-containing protein 20 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Sphfalx0007s0146.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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