PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0007s0142.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 659aa    MW: 70261.1 Da    PI: 6.9396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0007s0142.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83.1e-16452498455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  Sphfalx0007s0142.2.p 452 VHNLSERRRRDRINEKMKALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 498
                           6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-20446507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.495448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.83E-18451502No hitNo description
PfamPF000101.1E-13452498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-19452507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-18454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MQGQGSNGSK SHWPSIYAPH WNNGQVAEDG VTPSKPSVGS VASANKDSTL DAVVNDTTTE  60
TPVAPNVDYH DDEMVSWLQY PLDDSLERNY CSEFFGELPN SNMQVVKESL VGQGAGRLPR  120
MPVSNTGTDT VVNKASSAEA AMALGAGRAA GVIPQTGAEA FSKVRTLQPS FSKWQTHSPI  180
PTSSKGFGAY PTASQALPRT SPPASRPLLA PMAPPKPQPR AGTHIMQADS ARKLAPVNFS  240
HFSTSAAILR NYQGVGVLSG TPSNTLCKQP LAKLDVDAST STGSSISEST TKGRSGIGSQ  300
KDIEIHLQGS DSQQQSPGVD AGETVPIPAT RKEVEMPLLE GDSVICDTKP TEQDTLRTSV  360
VTDSAVLESA DKGMPQGRKV PDSQEPTVTS SSGGSGNSAE RAKEASTSNK RKAKLTEETD  420
CQSEDGEDES ADLKKPPHGR ASTTKRTRAA EVHNLSERRR RDRINEKMKA LQELIPNSNK  480
TDKASMLDEA IEYLKMLQLQ LKMMSMRSGM SIPPMVMPTG MQHLQMPQMA AMPPLGMGMG  540
MGMGMGMGMG MGLGMSMMDM AASGSGRAGM ALPPHVGASH NGNIPLTSLS RVDMHDPRLH  600
NPNVMDPINA YLARQHQPLQ IPQALNMDMY NAYMLQHQHL QHQQQHQQAA NVGGGPTQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1456461ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361305.10.0uncharacterized protein LOC112275291 isoform X1
RefseqXP_024361311.10.0uncharacterized protein LOC112275291 isoform X1
RefseqXP_024361319.10.0uncharacterized protein LOC112275291 isoform X1
RefseqXP_024361326.10.0uncharacterized protein LOC112275291 isoform X2
RefseqXP_024361334.10.0uncharacterized protein LOC112275291 isoform X2
RefseqXP_024361343.10.0uncharacterized protein LOC112275291 isoform X2
RefseqXP_024361352.10.0uncharacterized protein LOC112275291 isoform X2
TrEMBLA0A2K1L0R30.0A0A2K1L0R3_PHYPA; Uncharacterized protein
STRINGPP1S84_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-32phytochrome interacting factor 3