PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0007s0064.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 610aa MW: 67347.8 Da PI: 5.0902

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0007s0064.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.3e-09	398	443	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++ N++++++ +l+P kK + ++iL ++++YI++L+ Sphfalx0007s0064.1.p 398 HKLAERHRRSKFNEKLHTIFTLVPVI-----KKKDRVSILSHTIDYIRQLK 443 999********************7.....699*************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.23	393	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-13	396	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.91E-9	398	447	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-12	398	454	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-7	398	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-10	399	448	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MLTQVPQMDS LMNSLQDYVS MSVTPHMFGT VSRPPSSDLD STSGQGYPHL HSGTSVAQMT 60 APEGLPLPGP AEAFLPPPNL HRYTPGDFNE SLASSGAILR SEEPYFQWSA LGNQSLFFND 120 HELQSGFFDD LDIDVGADKT LFSPLDCKAE TKAASSNVDV LNPYTWDSNE FDPEEVVRQA 180 AGGLPEYYAP PSPLQHSTHV NSASSLQPAQ IAELSSAKSL DSSPSLGTVQ SLQADLHSSS 240 FSHLLEPSRS FGTHEASVTT TEQTTSNTDA FQLRQTTQCE SFTQNPAAWP SAYQGSNLTM 300 DVLDNELASW PTSHFRHSQD SLFQKRECKP NLRTCVGDDH ASPRQSLFRR WTEKIVPIIQ 360 EEAERQKLAE QQLAKSKLNP ADNIKSSNPA HDEAAHIHKL AERHRRSKFN EKLHTIFTLV 420 PVIKKKDRVS ILSHTIDYIR QLKAEVAQLQ EKCASSVLGH QQGGTTTTID KVQPPANVTI 480 SKHAPKEEEE EDFEGGLCFG SMTDLLKVAV YPDNEDGMVI KVDTNNNQTQ MLIQILTTSR 540 DLGLEVRWFN SKFIDNRMHV TLTATAQGKH EMMNCEQVQE ALQQVLVPFN SSPSSTITSG 600 VETFQYTSS*

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MLTQVPQMDS LMNSLQDYVS MSVTPHMFGT VSRPPSSDLD STSGQGYPHL HSGTSVAQMT  60
APEGLPLPGP AEAFLPPPNL HRYTPGDFNE SLASSGAILR SEEPYFQWSA LGNQSLFFND  120
HELQSGFFDD LDIDVGADKT LFSPLDCKAE TKAASSNVDV LNPYTWDSNE FDPEEVVRQA  180
AGGLPEYYAP PSPLQHSTHV NSASSLQPAQ IAELSSAKSL DSSPSLGTVQ SLQADLHSSS  240
FSHLLEPSRS FGTHEASVTT TEQTTSNTDA FQLRQTTQCE SFTQNPAAWP SAYQGSNLTM  300
DVLDNELASW PTSHFRHSQD SLFQKRECKP NLRTCVGDDH ASPRQSLFRR WTEKIVPIIQ  360
EEAERQKLAE QQLAKSKLNP ADNIKSSNPA HDEAAHIHKL AERHRRSKFN EKLHTIFTLV  420
PVIKKKDRVS ILSHTIDYIR QLKAEVAQLQ EKCASSVLGH QQGGTTTTID KVQPPANVTI  480
SKHAPKEEEE EDFEGGLCFG SMTDLLKVAV YPDNEDGMVI KVDTNNNQTQ MLIQILTTSR  540
DLGLEVRWFN SKFIDNRMHV TLTATAQGKH EMMNCEQVQE ALQQVLVPFN SSPSSTITSG  600
VETFQYTSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	5e-10	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0007s0064.1.p