PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0006s0390.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 585aa    MW: 65462.3 Da    PI: 6.8444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0006s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004383404221
                           EET..TTTEEESSHHHHHHHHH CS
               zf-C2H2   2 kCp..dCgksFsrksnLkrHir 21 
                           +C+   C+k F+++ +L+rH  
  Sphfalx0006s0390.1.p 383 VCKlpGCNKLFKSSKTLRRHVV 404
                           68999***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-5381403IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.974382412IPR007087Zinc finger, C2H2
SMARTSM003550.0037382407IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280384407IPR007087Zinc finger, C2H2
SMARTSM0035572454474IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MRSGLFWEDP TTDQGACGGA LLSLQSNAHP SSSPSLHGFY GGLGSQGMAQ DDMQQYAAAA  60
ASTNHNILPT CMNVDGSTSA FELSSSTFAV KPSSRGQQLL WCPGIQSDAA SAREYYSVHE  120
ELWSKNNNHH NGGWAQSIAA SSCIKPEMEM GVEGGVLVVR SQACPWSRLN LDSTNRFAAT  180
DPLRYHKLLV DAFSFMDDHV QQTPSSEEAR YVVTFSCLLP SFLLLIQGGT TTMWCKHCAL  240
LEKNLFYMRL NPAAAAEEIR PAADDIQRFQ DDTNSFKQVV AGSFFSDRDF SYSNLDTRKR  300
KEELNQEYSY WESSDRARVL WKMRELTNRA NRAEQRVMEL EQLLREHAVM THDDATSVDS  360
ELIAAPQLLP QRESFEARSE QLVCKLPGCN KLFKSSKTLR RHVVQKHSDN ARFLACNQPT  420
VNGVICRFET IHSGVLSYHR KHSLAHQRRE DWHICCPFCQ SKFARQHEMD RHQRICKSRP  480
HQQEAAPAAA ASLQQSTAVV HMPAMLSISD QLPLGPNLSD QLQQQHQNSV DTGSHHHYHH  540
HHHLQLLVPG NNHNIVESEG LSMTSTLMIP SGHVLDVDSS PSLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-