PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0006s0384.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LFY | ||||||||
Protein Properties | Length: 322aa MW: 36957.4 Da PI: 8.0682 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 106.1 | 5.5e-33 | 3 | 95 | 45 | 138 |
FLO_LFY 45 arklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll 133 r+ r+l+elfk++Gv+ +t+a +a++GftvstL++mkd+e+d ++ks++e ++l+llvGe++Gika vra+rr l+ee e++r +l Sphfalx0006s0384.1.p 3 GRENRRLKELFKEFGVQPATLAVMAQMGFTVSTLMNMKDDEVDFVIKSMIEEYHLELLVGEQFGIKAGVRAKRRALDEEM-EQQRLDML 90 567899**********************************************************************9965.66666666 PP FLO_LFY 134 sedee 138 +++ Sphfalx0006s0384.1.p 91 ARNGD 95 44433 PP | |||||||
2 | FLO_LFY | 361.9 | 1.1e-110 | 143 | 319 | 209 | 385 |
FLO_LFY 209 eeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyi 297 +++++++++++ gedgeer+rehPfivtepge a+gkknGLDYLfdLyeqC++fL +vq+iake+GekcPtkvtn+vfr+ak +ga yi Sphfalx0006s0384.1.p 143 RKKQKKRHSKEFGEDGEERPREHPFIVTEPGEPAKGKKNGLDYLFDLYEQCGKFLEEVQQIAKEKGEKCPTKVTNEVFRHAKLTGAGYI 231 455666777889***************************************************************************** PP FLO_LFY 298 nkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385 nkPkmr+YvhCYalhcLd e+snalr+ +kergenvG w+qacy+plv +a+ +gwdid +fn++++L+iWYvP+kLr+LCh+er k+ Sphfalx0006s0384.1.p 232 NKPKMRDYVHCYALHCLDMEQSNALRKVYKERGENVGQWCQACYYPLVLLARGNGWDIDDLFNRNEKLRIWYVPAKLRHLCHMERIKH 319 *************************************************************************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 8.1E-113 | 2 | 319 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MAGRENRRLK ELFKEFGVQP ATLAVMAQMG FTVSTLMNMK DDEVDFVIKS MIEEYHLELL 60 VGEQFGIKAG VRAKRRALDE EMEQQRLDML ARNGDRKMNS ADEPPESLLL KDGLGPPRDS 120 IGLLGFTNHP GGSDSEDKKL VARKKQKKRH SKEFGEDGEE RPREHPFIVT EPGEPAKGKK 180 NGLDYLFDLY EQCGKFLEEV QQIAKEKGEK CPTKVTNEVF RHAKLTGAGY INKPKMRDYV 240 HCYALHCLDM EQSNALRKVY KERGENVGQW CQACYYPLVL LARGNGWDID DLFNRNEKLR 300 IWYVPAKLRH LCHMERIKHG E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4bhk_A | 1e-112 | 153 | 320 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
4bhk_B | 1e-112 | 153 | 320 | 4 | 171 | FLORICAULA/LEAFY HOMOLOG 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | RKKQKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ712994 | 3e-46 | JQ712994.1 Sphagnum cuspidatum isolate EK681 LEAFY-like protein (LFY) gene, LFY-short allele, partial cds. | |||
GenBank | JQ712995 | 3e-46 | JQ712995.1 Sphagnum recurvum isolate EK710 LEAFY-like protein (LFY) gene, LFY-short allele, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391907.1 | 1e-175 | floricaula/leafy-like protein FL1 isoform X1 | ||||
Refseq | XP_024391909.1 | 1e-175 | floricaula/leafy-like protein FL1 isoform X2 | ||||
Swissprot | O04407 | 1e-136 | NEED_PINRA; Floricaula/leafy-like protein FL1 | ||||
TrEMBL | Q9FQ06 | 0.0 | Q9FQ06_9BRYO; AtranFlo1 protein (Fragment) | ||||
STRING | PP1S52_67V6.1 | 1e-174 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 3e-84 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0006s0384.1.p |