PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0006s0348.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 122aa    MW: 13198.5 Da    PI: 9.9416
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0006s0348.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.31.5e-4481071100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Cak+Cv+apyfp ++p+kfanvhk+FGasnv k+lk+lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+ +
  Sphfalx0006s0348.1.p   8 PCAACKLLRRRCAKGCVFAPYFPPDEPQKFANVHKIFGASNVNKMLKDLPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQVIH 96 
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l+++l +++++
  Sphfalx0006s0348.1.p  97 LQSQLTVANAK 107
                           *****999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.197108IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-448105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MPGSGMSPCA ACKLLRRRCA KGCVFAPYFP PDEPQKFANV HKIFGASNVN KMLKDLPVHQ  60
RGDAVSSMVY EANARVRDPV YGCVGAISSL QQQVIHLQSQ LTVANAKILS MQMHQAKVVL  120
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-5311095112LOB family transfactor Ramosa2.1
5ly0_B1e-5311095112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357913.14e-69LOB domain-containing protein 4-like
SwissprotQ8LBW32e-59LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2K1IUU89e-68A0A2K1IUU8_PHYPA; Uncharacterized protein
STRINGPP1S192_67V6.11e-68(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.17e-62LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]