PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0006s0303.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | EIL | ||||||||
Protein Properties | Length: 663aa MW: 72984.2 Da PI: 5.4518 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 441.2 | 8.9e-135 | 41 | 444 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 ++l+krmw+d+ +lkr+ke++kq ke+ + k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgk v+gasd Sphfalx0006s0303.1.p 41 DDLEKRMWRDRLRLKRIKEQQKQ----KEVIERGPKHKQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKAVSGASD 125 79********************9....677677899***************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S- CS EIN3 90 sLraWWkekvefdrngpaaiskyqaknlilsgessl.qtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGk 177 +LraWWke v+fdrngpaai+kyqa+++++++ + ++ ++h+l+elqDTtlgSLLsalmqhcdppqrr+plekgv+pPWWP+ + Sphfalx0006s0303.1.p 126 NLRAWWKERVRFDRNGPAAIAKYQADHALPGKPTKGtVSSVAPTPHTLQELQDTTLGSLLSALMQHCDPPQRRYPLEKGVPPPWWPSSN 214 ******************************99877734467789********************************************* PP -HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX. CS EIN3 178 elwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss. 265 e+ww+++gl+k qg+ppykkphdlkkawkv+v+ta ikhmsp+i++ir+l++qsk+lqdkm+akes+++ +vlnqee+++++ + Sphfalx0006s0303.1.p 215 EDWWPQVGLPKGQGAPPYKKPHDLKKAWKVGVMTAIIKHMSPDIAKIRKLVWQSKCLQDKMTAKESATWQAVLNQEEAMARQQNGTGHh 303 ********************************************************************************998877333 PP .....XXXXXXXXXXXXXX.XXXXXX........XXXXXX.XXXXXXXXXX...................................... CS EIN3 266 .....slrkqspkvtlsce.qkedve........gkkeskikhvqavktta...................................... 302 +++ ++ l++ ++ dve g + h+ + Sphfalx0006s0303.1.p 304 igggtPATSNTGSFALNNTaSEFDVEgleddllqGLS-----HSD-----Eggqdaetdefdpfdgngpsnstppkgvslggregdrlv 382 5666633445555555444034466654433322111.....111.....1223345567899************************** PP ...........XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 303 ...........gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 + +vv+ k + ++ ++ +++c + +++++e ++ f+d++ ++ ++ Sphfalx0006s0303.1.p 383 tgydksslrlkDGDVVDGGVTKHTFGNMLVPEHQVYMCPHVNCKHNEWRNAFSDRELRNMHQ 444 ***********777777777777777777778889************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 3.9E-125 | 41 | 291 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 6.5E-72 | 165 | 297 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 6.02E-60 | 170 | 294 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 663 aa Download sequence Send to blast |
MERSEDLEFG GNLDMGEFMA DNEGDGMQEE EDFSDEDIDV DDLEKRMWRD RLRLKRIKEQ 60 QKQKEVIERG PKHKQSQEQA RRKKMSRAQD GILKYMLKMM EVCKAQGFVY GIIPEKGKAV 120 SGASDNLRAW WKERVRFDRN GPAAIAKYQA DHALPGKPTK GTVSSVAPTP HTLQELQDTT 180 LGSLLSALMQ HCDPPQRRYP LEKGVPPPWW PSSNEDWWPQ VGLPKGQGAP PYKKPHDLKK 240 AWKVGVMTAI IKHMSPDIAK IRKLVWQSKC LQDKMTAKES ATWQAVLNQE EAMARQQNGT 300 GHHIGGGTPA TSNTGSFALN NTASEFDVEG LEDDLLQGLS HSDEGGQDAE TDEFDPFDGN 360 GPSNSTPPKG VSLGGREGDR LVTGYDKSSL RLKDGDVVDG GVTKHTFGNM LVPEHQVYMC 420 PHVNCKHNEW RNAFSDRELR NMHQSTCPHR PEAQVSGALY LGAVGQPSQL LSGQGGLYQT 480 GSLVGNHRSI AGASRFMPLA LPAPQSVSSL PNMSEDSSQV LHDLFAGLYG TGGMQLDGSM 540 ADGGLSRSDT QGHGVTRPSG EESGLNHHHH HHQSMDTSEL VSEESLFGQG FDNSTGVHDI 600 SIENCGLQKD GKNFDHTFEH QDMEILPEYA FSAPFDIGLD HSVPLGTSTD LLDDDLIWYF 660 GA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 7e-75 | 169 | 296 | 2 | 129 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 7e-75 | 169 | 296 | 2 | 129 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389127.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 1e-156 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2K1JUU1 | 0.0 | A0A2K1JUU1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S11_337V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20770.1 | 1e-150 | EIL family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0006s0303.1.p |