PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0006s0295.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 1192aa    MW: 127531 Da    PI: 6.3599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0006s0295.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.3e-1654100148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT+eEde l +av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  Sphfalx0006s0295.1.p  54 KGGWTPEEDEVLRRAVQWHKGKNWKKIAEFFS-DRTDVQCLHRWQKVL 100
                           688*****************************.************986 PP
2Myb_DNA-binding582.1e-18106152148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT+ Ed++++++v+++G   W+ Ia++++ gR +kqc++rw+++l
  Sphfalx0006s0295.1.p 106 KGAWTKAEDDRILELVTKHGATKWSMIAQHLP-GRIGKQCRERWHNHL 152
                           79******************************.*************97 PP
3Myb_DNA-binding56.85e-18158202147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +WT++Ed+ l++a++++G++ W+ Ia+ ++ gRt++++k++w++ 
  Sphfalx0006s0295.1.p 158 REAWTEQEDLTLIHAHQLYGNK-WAEIAKFLP-GRTDNSIKNHWHST 202
                           789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.77649100IPR017930Myb domain
SuperFamilySSF466891.65E-1552106IPR009057Homeodomain-like
SMARTSM007172.1E-1353102IPR001005SANT/Myb domain
PfamPF002491.2E-1354100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2156112IPR009057Homeodomain-like
CDDcd001671.51E-1257100No hitNo description
PROSITE profilePS5129432.022101156IPR017930Myb domain
SuperFamilySSF466893.74E-31103199IPR009057Homeodomain-like
SMARTSM007176.0E-16105154IPR001005SANT/Myb domain
CDDcd001673.71E-14108152No hitNo description
PfamPF139218.8E-17109168No hitNo description
Gene3DG3DSA:1.10.10.603.0E-26113159IPR009057Homeodomain-like
SMARTSM007171.4E-17157205IPR001005SANT/Myb domain
PROSITE profilePS5129424.326157207IPR017930Myb domain
CDDcd001674.71E-13160200No hitNo description
Gene3DG3DSA:1.10.10.607.5E-24160207IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1192 aa     Download sequence    Send to blast
MTSLNAPGNS SSTENNKQQR SSACSSGAES DDDTSHHLPP VQGRTGGPTR RSSKGGWTPE  60
EDEVLRRAVQ WHKGKNWKKI AEFFSDRTDV QCLHRWQKVL NPDLVKGAWT KAEDDRILEL  120
VTKHGATKWS MIAQHLPGRI GKQCRERWHN HLNPNIKREA WTEQEDLTLI HAHQLYGNKW  180
AEIAKFLPGR TDNSIKNHWH STMKKKVDPA TATDPVSKAL AEYQAHQESM NPINPVGRLD  240
SSMSTVGRAG APLTNEATTS SIQPIRHIRG MPAATGPLSM TTRPLQFGEQ YSEAKSCNPA  300
SPSSTAYPSL YANHENNLEK ISCKVANAKK EHSACEAAVG GHSTRPGTSQ ASWDGSPRSS  360
GQSREYSGWS SSQSLGCSVS FSGVPMSRTL LPSIPSQQQQ LLPLHCPQET GPLSTMELPS  420
FPSFSFVRPA SEMMASSSSQ GFQNMTLCVM GSFVPTASVP VTTAANLMQS NDAENHRGVP  480
MTHGGNLAVM MDPNSQSFEW MRECFLSQPP GTQPVLSVPS AQCDTESEEH TLDGVVGYQD  540
EVFMAANQAV SNYHLQTPFL AELGLEEDGE MEDGSTGTTM DGLFYEPPRM PSCSTDSPFP  600
SYDLIQGGQS LQAYSPLGVR QMIMPAGNCI TPPPYHHLSQ SPFQGCSPQS ILRSAARSFS  660
GSPSILRRKR PRPLTIPPKP GSICEEKKDM QLDRTHMSKS SEEEKNAQVG GGLLNGSAKT  720
TDDDRSTEED VRPNEEEDSI KGAAVPQAAG GCQARAALFV SPPYHLGKTS IKISNAAEET  780
FASEMPSACP SQGMATNSSG GQVGGGNSSG GTPFSARDGQ HGAASNGLWE SAGGKYNKRG  840
RSQGFHHESG TGSRRGRSTT MVTMKTVQEG SMLVEQRTNA QGQPFFPRDA NTLPTHLVML  900
PGAQNYASPR VVGLKHNAGF GGGGSELRAS SCEAAAAAAV GGGSSGGLMS ATTTVLSSRS  960
NRREMMMMSP GSMSTFGVWS SVTCASPVGI AVQHHTPAKD WLSELESFFA SPTTIWREPW  1020
HMDPSPSAQK DGGMSFLEGL EAAVDHGEDD ALGIMQHLHE QSASAYCEAE EVLARPPPPA  1080
VSVECMASPL SGYQAQSDAN PNPHDCKENM RVGSDDIDLG TSASVNWFSP FHVDFLSPNG  1140
AVVAGTPPPV WGGVGSSSVV GLNGGSDENY LASGGACDPF SPSMYLLKEC R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-69542076159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-69542076159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1668672KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.19e-85Homeodomain-like protein