PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0006s0291.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SBP

Protein Properties

Length: 737aa MW: 79852.5 Da PI: 6.4057

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0006s0291.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.6e-41	250	327	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adls keyhr+hkvCe+hska+ +++ g+eqrfCqqCsrfh lsefDe+krsCrrrLa+hnerrrk q+ Sphfalx0006s0291.1.p 250 RCQVEGCTADLSASKEYHRKHKVCEMHSKASRAMAGGREQRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNERRRKLQP 327 6**************************************************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-34	244	312	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.659	248	325	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.55E-39	249	329	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-30	251	324	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MVLVVDVFLG SQVLGSLLQC LRFEREKRER EQEFVSCFWF LSGLRFCKQT TEKKREDEMA 60 MAITGASPHE SRWGNVAAWE QQPKTDGLLR DGDGGGGGGG WELKDWESIT LLYAPTTTTM 120 TAAAAAASCG GGGNANENCS ILHEVFSMVK SEPDTGHQLH EAAPAALKLG LRLPEKNEEE 180 KEEEVVFKGC SSSSSVAAVA AETTTATSVV VAAVAPPPPV VAVVPSSSSS PSHPSSKKQR 240 VMSPGSQNPR CQVEGCTADL SASKEYHRKH KVCEMHSKAS RAMAGGREQR FCQQCSRFHV 300 LSEFDEGKRS CRRRLAGHNE RRRKLQPDAQ NPAALSSRSS SPMHTDAFHM HGAAVSLSLE 360 DCRHTQLLQQ IRGTGGIPAT LDDDEEHSIP FLNGANLSSC PPWSSDENVR APSQQHQQVG 420 GKEEGHSIFL DQHHHHHFSS PSNRLLMFLQ SPDSQMQGGL YPSLDVAFSN LSPPPLGSSH 480 EFVDGGANKR PSSSLGQNLS LGSFEDDYHN MGCDDSQISG RALSLLSWGT PCPPAAAALD 540 LSIDHTNLEY LVPDNTCSNL ASSFTNHLHH HHHHQQQQPQ EQYLALEKLY QVQSAGLGGM 600 EVSESSGITD SHPLEQSTQL QHAGGTTSGN FLSSLGGLGL DAANSMLALF QSSNELEGIP 660 SCGVSRSAHQ ISKATSDLVH TRSLQVHHHQ QHFHEVRASV HLQTQTNCLN GEFGEFGSLQ 720 QHCERSLFSS TQQQML*

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MVLVVDVFLG SQVLGSLLQC LRFEREKRER EQEFVSCFWF LSGLRFCKQT TEKKREDEMA  60
MAITGASPHE SRWGNVAAWE QQPKTDGLLR DGDGGGGGGG WELKDWESIT LLYAPTTTTM  120
TAAAAAASCG GGGNANENCS ILHEVFSMVK SEPDTGHQLH EAAPAALKLG LRLPEKNEEE  180
KEEEVVFKGC SSSSSVAAVA AETTTATSVV VAAVAPPPPV VAVVPSSSSS PSHPSSKKQR  240
VMSPGSQNPR CQVEGCTADL SASKEYHRKH KVCEMHSKAS RAMAGGREQR FCQQCSRFHV  300
LSEFDEGKRS CRRRLAGHNE RRRKLQPDAQ NPAALSSRSS SPMHTDAFHM HGAAVSLSLE  360
DCRHTQLLQQ IRGTGGIPAT LDDDEEHSIP FLNGANLSSC PPWSSDENVR APSQQHQQVG  420
GKEEGHSIFL DQHHHHHFSS PSNRLLMFLQ SPDSQMQGGL YPSLDVAFSN LSPPPLGSSH  480
EFVDGGANKR PSSSLGQNLS LGSFEDDYHN MGCDDSQISG RALSLLSWGT PCPPAAAALD  540
LSIDHTNLEY LVPDNTCSNL ASSFTNHLHH HHHHQQQQPQ EQYLALEKLY QVQSAGLGGM  600
EVSESSGITD SHPLEQSTQL QHAGGTTSGN FLSSLGGLGL DAANSMLALF QSSNELEGIP  660
SCGVSRSAHQ ISKATSDLVH TRSLQVHHHQ QHFHEVRASV HLQTQTNCLN GEFGEFGSLQ  720
QHCERSLFSS TQQQML*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	243	324	2	84	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-37	SBP family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0006s0291.1.p