PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0006s0052.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 302aa    MW: 32307.5 Da    PI: 9.0798
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0006s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-202171256
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +++GVr ++ +gr++AeIrd ++    ++r++lg+f+taeeAa+a++aa+++l+g+
  Sphfalx0006s0052.1.p 21 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDAAARALRGA 71
                          69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-172077No hitNo description
SMARTSM003801.6E-352184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-312178IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-212178IPR016177DNA-binding domain
PROSITE profilePS5103222.6822178IPR001471AP2/ERF domain
PfamPF008471.8E-132170IPR001471AP2/ERF domain
PRINTSPR003676.2E-112233IPR001471AP2/ERF domain
PRINTSPR003676.2E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAQRFERGGT TKPHQAEQGA HFRGVRKRPW GRFAAEIRDP WKKTRVWLGT FDTAEEAARA  60
YDAAARALRG AKAKTNFMSP SDDQSTSTQS STVESWSCSP QKNLYRAAAP ADAHRTKNLC  120
TSGLVCDSSC RHSALDLNVS ILDSAVAEEP GRAAVFKSAS AGRSCMSPAE GMMCVLSGKR  180
GAAASPIQAF FEDGKKTTPC EKRQKGLKTL DAIAAERRDL GVGNRDWLEV KKMMTGMQQS  240
IGGGGAGETT RACHSDCDSS SSVILNSEVA CGQLQHPQQD VKPVKKGGAL LFLDLNLPPC  300
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-201877262ATERF1
3gcc_A5e-201877262ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367682.16e-71ethylene-responsive transcription factor RAP2-12-like
RefseqXP_024398578.14e-71ethylene-responsive transcription factor WRI1-like
TrEMBLA0A2K1IA661e-69A0A2K1IA66_PHYPA; Uncharacterized protein
TrEMBLA9SW671e-69A9SW67_PHYPA; Predicted protein
STRINGPP1S127_75V6.12e-70(Physcomitrella patens)
STRINGPP1S487_24V6.12e-70(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-18ERF domain protein 12