PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0005s0313.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 722aa MW: 78033.3 Da PI: 6.4564 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.3 | 2.4e-07 | 629 | 672 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++ +++ L++l+P+ ++l+ +++L ++ eY++ Lq Sphfalx0005s0313.1.p 629 IAARTRREKFSDRIRILQTLVPNG-----ERLDTVSTLGQTLEYVRFLQ 672 5679******************96.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.44 | 622 | 671 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-10 | 625 | 678 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.6E-11 | 628 | 677 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.16E-8 | 628 | 675 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-8 | 629 | 677 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-4 | 630 | 672 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MMVARIAETV ASLMSPVVHS SGHDQSQQQQ QQQAENISLQ VSSCTQSTTR LQQQQQQPPP 60 PWMSWNLGMT TSTSNNNVES REFYHGMQLS SSSSSSSTGV AAGRMQASAD RHIIPDKSLD 120 WKKQLGLISR LEHPVARDQL VHPIAGFPLD DDNGCSLTSL VNGYKSAASF GGDLQPRVTT 180 TGSFLVPGCA EFTHGSALGL LSNLSIPPVS RHHAPKSSLF EFGGTRGSCS TPSFCVAGSP 240 VTVDPAMPPK QLMASPDAAA GLVSFHGSTN HDHAATSCCL DSPPSMVDSD HSNSSAASLI 300 SFDESSLEED AGQYNVMQNP SNNSFTWMQQ QAAENRFVDS RFWMQHQPST TMSPDPHASV 360 HRPIAATSTA ISESHFSEDT ISAFRMNPAS TLDNVTADIG KLGHLAGSVR RPHAVVVGSA 420 DESTHNRGPR SWCPQQQWVD QQTMQSSTGQ QVVSLPPSAE ESVHKIVSRD RDHGSTDILN 480 NNLHQQLAAG ATITNRKRSS LELMVDQTSD RLAELVSPWI PANQHRQLGA GVASIQTGVR 540 TSKFQSLEAG RGVGCDDDEQ AAGKLDPAAV SALLYEERQA AAATTEQNLH HCFLHLPDSS 600 LSDDHHLSSR PPPPKMRRRH GTATDPQSIA ARTRREKFSD RIRILQTLVP NGERLDTVST 660 LGQTLEYVRF LQHQVWEFYN SGNEAAACGR AHESEAGAAL PEKWKEFKEH TITAGADHIV 720 A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 3e-15 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0005s0313.1.p |