PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0005s0290.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | CPP | ||||||||
Protein Properties | Length: 610aa MW: 64688.2 Da PI: 7.8138 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 38.3 | 2.7e-12 | 127 | 167 | 1 | 42 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k++k+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ e+ Sphfalx0005s0290.2.p 127 KKCKQCNCKNSRCLKLYCECFASGTYCEG-CNCVNCCNNVEN 167 589*************************9.********9875 PP | |||||||
2 | TCR | 51.4 | 2.1e-16 | 211 | 250 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC dCkN e Sphfalx0005s0290.2.p 211 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCVDCKNFE 250 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.4E-13 | 127 | 167 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.321 | 128 | 251 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.7E-8 | 130 | 164 | IPR005172 | CRC domain |
SMART | SM01114 | 2.0E-20 | 211 | 252 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 6.2E-13 | 214 | 249 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MAEEPPEQIA GVKTDAPGSP AASSNGAHQV QSMAFAPTSP AVSRTVNRPV DLDFPQPVDT 60 VSGPMQGVQG DHATRKAVPR QLDFTSMYGG PAGSAEGPVR TQPPVKHGTP RAERSRPAFD 120 SKDGTPKKCK QCNCKNSRCL KLYCECFASG TYCEGCNCVN CCNNVENESV RQEAVEATLE 180 RNPNAFRPKI FSSPSLRDLR EDVGEQPLIG KHNKGCHCKK SGCLKKYCEC FQANILCSDN 240 CKCVDCKNFE GSEERRALFH GDHNMGLNFM VQMAANGSSQ TIPGYLSPSP PMKKRRTHEL 300 VFAGPGLKEQ GPPGRTPSLP VQGHLAATVS TAVNTPITSM STIAGGSASA APVKVVHRSL 360 LAGVVQLEAI QELCKLLVIV SAEAQKDFLA KHSLPCITAQ QATETGGSKS SKEPSPGIGR 420 EEEVPKQKSD ERSDPHESEK ASPARMVSAV GDDVEVDTAT QQRAMSPGTL ALMCDEKDPL 480 FTAPPSPSGG LCSTEFSNTT PSHPGQLYAE QERAILLEYR ECLRRIIAVG KRRASQFATE 540 VAQAEMYAAT SLQQRGQPGS DGAQHPRPVA APSAPVIVGS TGLCTIGMKP AKLGLPLQTA 600 AAPTSSVSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-30 | 130 | 260 | 12 | 132 | Protein lin-54 homolog |
5fd3_B | 5e-30 | 130 | 260 | 12 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 297 | KRRTH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361559.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2K1IIF0 | 0.0 | A0A2K1IIF0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S10_254V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-107 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0005s0290.2.p |