PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0005s0290.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CPP
Protein Properties Length: 615aa    MW: 65085.7 Da    PI: 7.8138
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0005s0290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR38.22.8e-12132172142
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                           k++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  Sphfalx0005s0290.1.p 132 KKCKQCNCKNSRCLKLYCECFASGTYCEG-CNCVNCCNNVEN 172
                           589*************************9.********9875 PP
2TCR51.42.1e-16216255140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Sphfalx0005s0290.1.p 216 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCVDCKNFE 255
                           589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.4E-13132172IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.321133256IPR005172CRC domain
PfamPF036381.7E-8135169IPR005172CRC domain
SMARTSM011142.0E-20216257IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.3E-13219254IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAEEPPEQIA GVKTDAPGSP GGIVAAASSN GAHQVQSMAF APTSPAVSRT VNRPVDLDFP  60
QPVDTVSGPM QGVQGDHATR KAVPRQLDFT SMYGGPAGSA EGPVRTQPPV KHGTPRAERS  120
RPAFDSKDGT PKKCKQCNCK NSRCLKLYCE CFASGTYCEG CNCVNCCNNV ENESVRQEAV  180
EATLERNPNA FRPKIFSSPS LRDLREDVGE QPLIGKHNKG CHCKKSGCLK KYCECFQANI  240
LCSDNCKCVD CKNFEGSEER RALFHGDHNM GLNFMVQMAA NGSSQTIPGY LSPSPPMKKR  300
RTHELVFAGP GLKEQGPPGR TPSLPVQGHL AATVSTAVNT PITSMSTIAG GSASAAPVKV  360
VHRSLLAGVV QLEAIQELCK LLVIVSAEAQ KDFLAKHSLP CITAQQATET GGSKSSKEPS  420
PGIGREEEVP KQKSDERSDP HESEKASPAR MVSAVGDDVE VDTATQQRAM SPGTLALMCD  480
EKDPLFTAPP SPSGGLCSTE FSNTTPSHPG QLYAEQERAI LLEYRECLRR IIAVGKRRAS  540
QFATEVAQAE MYAATSLQQR GQPGSDGAQH PRPVAAPSAP VIVGSTGLCT IGMKPAKLGL  600
PLQTAAAPTS SVSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3313526512132Protein lin-54 homolog
5fd3_B2e-3313526512132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298302KRRTH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361559.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K1IIF00.0A0A2K1IIF0_PHYPA; Uncharacterized protein
STRINGPP1S10_254V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-107Tesmin/TSO1-like CXC domain-containing protein