PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0005s0217.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

BBR-BPC

Protein Properties

Length: 321aa MW: 35261 Da PI: 9.029

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0005s0217.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	257.9	5.9e-79	8	320	9	301
GAGA_bind 9 rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...sa 94 n+ ++ +aa +++ lqlm++iaerda++ e+n+a++ek aa aerd a+lqrd+ala+r+ al++rd ++ al +ve++++ + Sphfalx0005s0217.1.p 8 NNWHHHCKAAVSDHHVVLQLMAVIAERDAALLEKNTAIAEKMAAWAERDAALLQRDAALADRDSALLKRDAAISALAKVEKESSscaRK 96 45665555555667899******************************************************9999998877767789 PP GAGA_bind 95 lpvgvqvlsgtksidslqqlse....pqledsavelreeekl.ealp...ieeaaeeakekkkkkkrqrakkpkekkak.....kkkkk 170 p++ + ++g+k ++ + ++ ++++++v + + + + a + + ++++++ +k++ + ++ +p ++ka k++ Sphfalx0005s0217.1.p 97 RPSSAGGIHGSKLLQRVGFAEHyslvGEFQPNSVMTFDAQSTwVAGEhlaFQGTRTQTELWRKQSPQVSPGVPAQNKALhlavkKVESW 185 9************998887777566666666333332202222000222222222223333334444555555442311122222 PP GAGA_bind 171 sekskkkvkkesad.erskaekksidlvlngvslDestlPv......PvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252 ++ +++ ++ +++ ++ + ++ +++ + +t+Pv P CsCtG+ +qCY+WG+GGWqSaCCtt +S +PLP+++k+rg Sphfalx0005s0217.1.p 186 PSPIQRQLQEYQVKgDEEEGQTRESEIAS---TASYATMPVsaptriPYCSCTGMNQQCYRWGSGGWQSACCTTLLSLHPLPMNPKKRG 271 22333333333333344444444455432...22334454333333499************************************ PP GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +R+agrKmS gaf klLekL eG d+s vDLkdhWAkHGtn++vt+r Sphfalx0005s0217.1.p 272 SRVAGRKMSAGAFDKLLEKLKLEGVDVSYSVDLKDHWAKHGTNRYVTLR 320 *********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	9.7E-61	1	320	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.4E-66	8	320	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDGVERGNNW HHHCKAAVSD HHVVLQLMAV IAERDAALLE KNTAIAEKMA AWAERDAALL 60 QRDAALADRD SALLKRDAAI SALAKVEKES SSCARKRPSS AGGIHGSKLL QRVGFAEHYS 120 LVGEFQPNSV MTFDAQSTWV AGEHLAFQGT RTQTELWRKQ SPQVSPGVPA QNKALHLAVK 180 KVESWPSPIQ RQLQEYQVKG DEEEGQTRES EIASTASYAT MPVSAPTRIP YCSCTGMNQQ 240 CYRWGSGGWQ SACCTTLLSL HPLPMNPKKR GSRVAGRKMS AGAFDKLLEK LKLEGVDVSY 300 SVDLKDHWAK HGTNRYVTLR *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391178.1	1e-102	serine/threonine-protein kinase 24-like
TrEMBL	H1ZN63	1e-106	H1ZN63_PHYPA; GAGA-binding transcriptional activator
STRING	PP1S56_2V6.1	1e-101	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68120.1	1e-45	basic pentacysteine 3

Link Out ? help Back to Top
Phytozome	Sphfalx0005s0217.1.p