PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0005s0159.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | NF-YC | ||||||||
Protein Properties | Length: 375aa MW: 39854.8 Da PI: 4.3848 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 28.4 | 3.5e-09 | 255 | 324 | 20 | 89 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 +P +r+k+i+k d+d+k ++++ +l+++a lf+ l+ + ++k ++++ + + a +++ f Sphfalx0005s0159.1.p 255 PFPQSRVKRIIKLDPDIKLVASDGIALITQATALFLESLAAAVFSSMVQSKHKSVRGQHVILAAKSSRRF 324 589*****************************************************99999988888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47095 | 6.68E-9 | 140 | 202 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 7.5E-4 | 142 | 228 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 10.386 | 143 | 206 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.6E-9 | 145 | 205 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 9.83E-9 | 145 | 196 | No hit | No description |
Pfam | PF00505 | 1.8E-7 | 147 | 203 | IPR009071 | High mobility group box domain |
Pfam | PF00808 | 3.0E-10 | 256 | 317 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.7E-11 | 256 | 324 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.0E-9 | 256 | 323 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MASMHAEEEE GTDAGSRCFE KELEESPGMC GVASDVEVFE GIPPVKSRDE ESQIMDSFAA 60 DQEVVIVESA AEESNEKKRL ALASNADDIQ QNRTVVLEAT DAQELQTVDS LEENQEAASE 120 GDNARAVNGA VVSTDTNKSA PGNTKRLSSY FSFANENREA VKAELQVAGK PATASAVAKV 180 LGERWRALTD AEKQAFSRQQ DRSSEKSSCL LTKGRKPQQA KDMPVAQGEF SAGDGGDGSP 240 DEGDGNLGAE EFTAPFPQSR VKRIIKLDPD IKLVASDGIA LITQATALFL ESLAAAVFSS 300 MVQSKHKSVR GQHVILAAKS SRRFCDCVGN DIASLLNTSS QLGDESDGEV EADEDGNDGA 360 TLAQPHRKKA ARKV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-08 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0005s0159.1.p |