PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0005s0055.4.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 521aa    MW: 57437.6 Da    PI: 6.4487
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0005s0055.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20193242255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a++aa+++++g
  Sphfalx0005s0055.4.p 193 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDAAARNFRG 242
                           7********.**********94....45************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-20193252No hitNo description
PROSITE profilePS5103224.737193250IPR001471AP2/ERF domain
SMARTSM003802.9E-37193256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32193251IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-22193251IPR016177DNA-binding domain
PfamPF008471.6E-13193242IPR001471AP2/ERF domain
PRINTSPR003672.4E-11194205IPR001471AP2/ERF domain
PRINTSPR003672.4E-11216232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MVSALAQPSS LVPSSDGAAD YSYEAPSSSH RASPSTQDYQ QYGDFRAGEG GGEEGEQVAP  60
TAGQKRFRTE ERQEYDGVPY TQRLWVDPAR AIAAAWQPLG EAARTRADTG TILEARQGYS  120
GSMTQQPHIN YHSAPKKLPE IRRPKEEAIT IKYEEREVQL QEEREASSMQ SVEAGPSAAA  180
AHQPEAQPVK KRRYRGVRQR PWGKWAAEIR DPKKAARVWL GTFDTAEDAA LAYDAAARNF  240
RGLRAKLNFP DHPPREPQEA SPLSLPSSTT VSSLPVPSST VMTLSTLAPS TTWATTSSMA  300
GGDSMRQVPS NIGNWSAAAH RAPTSSTSLH NTPLIPMTNC AQMSTTLPQP PSNLPPPHMT  360
YLSPDSMQQL MTYDQQQILW QRHNRFRFAA PTTPPTDYGF PYHSQNVLQQ QPRSLNMIQY  420
RLEHVQSGNL QGSQDQQAIP TMPVNMSGQQ RQQASAFAAG TSQLSLRQQP ELSYDQIFEQ  480
PDNGWSTESM LGQNSTGLSL GQDFININTY FPEEQLPPQP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22190250263ATERF1
3gcc_A3e-22190250263ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-23related to AP2 6l