PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0005s0047.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 443aa    MW: 48955.5 Da    PI: 7.9493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0005s0047.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12253300355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k Lq
  Sphfalx0005s0047.2.p 253 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKTLQ 300
                           5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9254300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16254314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-16254314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-12255304No hitNo description
SMARTSM003531.8E-14256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEVAYPSTTS MQWLPELDME DPAVGRHLDP VFHSTAEQYS TIAATQNANY DLVSSLDRLK  60
QKEIEKMPSG SISNIAGFTS LGGHSGLGRP QKTFKPNSWD SDLGYGHSHF PSAQPMMTSS  120
FHQPGNDSRC FDLQQQQQHQ QAHHQYQHTV SRNLDGFVMS LSHLQEETAA PPRTASNHIE  180
IRSSPASGVQ ESCNTDAISL EGPSRLKPLS PTESIRGKRK SGLLPMEHFK INRMAPVKIP  240
PPPPATKSSG HSQDHIMAER KRREKLSQRF IALSAIVPGL KKMDKASVLG DAIKYVKTLQ  300
EKLRTIEEQM PKKRVRSLSN LKKAATSIDK EGLPTSGTGS GAEKVDNEVI VREDDGPVPE  360
IEARAVDRSV MIRMHCEKRK GLLVRCLAEL ERLKLAILSA NMLSFSSTSI DLTCSVQMEE  420
GCETSTDEIV RSLHALYRTL DD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-13254309863Transcription factor MYC2
5gnj_B8e-13254309863Transcription factor MYC2
5gnj_E8e-13254309863Transcription factor MYC2
5gnj_F8e-13254309863Transcription factor MYC2
5gnj_G8e-13254309863Transcription factor MYC2
5gnj_I8e-13254309863Transcription factor MYC2
5gnj_M8e-13254309863Transcription factor MYC2
5gnj_N8e-13254309863Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263ERKRRE
2259264RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-43bHLH family protein