PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0005s0047.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 443aa MW: 48955.5 Da PI: 7.9493 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7.2e-12 | 253 | 300 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k Lq Sphfalx0005s0047.1.p 253 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKTLQ 300 5699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.945 | 250 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-9 | 254 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-16 | 254 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-16 | 254 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.12E-12 | 255 | 304 | No hit | No description |
SMART | SM00353 | 1.8E-14 | 256 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MEVAYPSTTS MQWLPELDME DPAVGRHLDP VFHSTAEQYS TIAATQNANY DLVSSLDRLK 60 QKEIEKMPSG SISNIAGFTS LGGHSGLGRP QKTFKPNSWD SDLGYGHSHF PSAQPMMTSS 120 FHQPGNDSRC FDLQQQQQHQ QAHHQYQHTV SRNLDGFVMS LSHLQEETAA PPRTASNHIE 180 IRSSPASGVQ ESCNTDAISL EGPSRLKPLS PTESIRGKRK SGLLPMEHFK INRMAPVKIP 240 PPPPATKSSG HSQDHIMAER KRREKLSQRF IALSAIVPGL KKMDKASVLG DAIKYVKTLQ 300 EKLRTIEEQM PKKRVRSLSN LKKAATSIDK EGLPTSGTGS GAEKVDNEVI VREDDGPVPE 360 IEARAVDRSV MIRMHCEKRK GLLVRCLAEL ERLKLAILSA NMLSFSSTSI DLTCSVQMEE 420 GCETSTDEIV RSLHALYRTL DD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-13 | 254 | 309 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 8e-13 | 254 | 309 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 8e-13 | 254 | 309 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 8e-13 | 254 | 309 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 8e-13 | 254 | 309 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 8e-13 | 254 | 309 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 8e-13 | 254 | 309 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 8e-13 | 254 | 309 | 8 | 63 | Transcription factor MYC2 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 263 | ERKRRE |
2 | 259 | 264 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0005s0047.1.p |