PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0005s0024.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Nin-like

Protein Properties

Length: 1282aa MW: 137788 Da PI: 5.055

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0005s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.8e-28	825	875	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Sphfalx0005s0024.1.p 825 EKTIGLNVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 875 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.529	807	895	IPR003035	RWP-RK domain
Pfam	PF02042	7.8E-25	828	875	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.21E-19	1183	1268	No hit	No description
SMART	SM00666	3.0E-15	1184	1266	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.3E-17	1184	1265	No hit	No description
PROSITE profile	PS51745	22.927	1184	1266	IPR000270	PB1 domain
Pfam	PF00564	8.3E-13	1185	1265	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1282 aa Download sequence Send to blast
MDVPAPHGRF EHAAERFGVS DFVALSQQWS PVGFSNSSSG DVKSLLDEAV LLSDFMELEP 60 LCEQAAAGGG GGDPWVTTSA AAAVGDLSFP YVSFSPGFNP TGFSPPSLPN SQAPPPAAAD 120 VFTVAPSSQS NSAFAVPSQL SPGDYVLQCA RSPLSSGLAE LLDQSQQVPG DGWGGPLTSD 180 LFSTSPSPRS EDCFAELAQL LLSGQPSGAP ADDGGGGGCV AETCSNGRRD PSCVENGQQD 240 SRSGARLGHE GSYSPVPVQC TSADLSGGGK RVYSLQDEYP RMRKPVDSEV VSAGQEREVK 300 RAADGHIGSN RKHINPVETS VPFKQQLMQA LQIIGGSCAD VLAQVWMPVV KKDGLVVLVT 360 KEQPFVLKHC NDQLLYYRSI SEQYNFAVAG GHPGLPGRVF LHHVPEWTPN VQFYSSQEFL 420 RVKYAQEFDV RGTLAVPVFE PASHTCLAVI ELVRMSEKVE YAPEIDIICQ ALRAVNLACS 480 DGVEFPVQDT MHRMQTQGRQ AALVEIAEVL TAVCETHKLP LAQTWVRGCH QVIDESSGKT 540 QIKKGVGSST SSHGNRVFLR TGDGPHYLTD HNLQGFRHAC LEHFLEEGQG VAGKAFQSNQ 600 PCFVSDVKNY SKVEYPLGHY ARLFSLGAAV AIRLRSMYTG TDDFVLEFFL PLKCNNSQDQ 660 QVLLNSLSVI MQRVCRSLRT VSDNELEEEK SAVHLEEGTE VDSKSPELAD VAGEGALVVH 720 ASMPVVEDML KAHTPPSQQT QEPTALQDQQ QQVIAPLQCR LPHQESHDWV EELHTEEVRQ 780 PMEEVQEQEF ASTQEQGVEA STSTSLAQDI ANTRQRLDRR RGTTEKTIGL NVLQQYFAGS 840 LKDAAKSIGV CPTTLKRICR QHGISRWPSR KINKVSRSLK KLQGVIDSVP VADGTLCINP 900 HSGDLVSANV ASATMMQAQE QEEVPAGKRN LSQSCSVPPP NHCDTNTDTD QPLALKDAPL 960 SFQAVHVSNK QSAGTGVESL KHSDENSGES TGAGHDSTNS ESGERCGALL SKHESADASP 1020 TAEEPIITAG ARTDMPAQNS PALAMGNGSS NRSLHERSPG RSLFSKFVGG ASLGTVAGSR 1080 LSDSICAESR VHGGAGALTA LKGSQGPSSS IQNASVRSSR TFGEANYVQD EPGDDREVNC 1140 QMDSEDSEPS GASNALGASD CSFPLSAVGG AYDKRWSMLP EVKRVTVKAT LGSDTVRFKL 1200 PLDAGYLELR RAIGSKLELE EQTLHLKYLD DEDEWMLLNS DADLMECIEV MQTSGAHIIK 1260 LMVHSSHSTK IPHDNLNSRT L*

Sequence ? help Back to Top

Protein Sequence Length: 1282 aa Download sequence Send to blast

MDVPAPHGRF EHAAERFGVS DFVALSQQWS PVGFSNSSSG DVKSLLDEAV LLSDFMELEP  60
LCEQAAAGGG GGDPWVTTSA AAAVGDLSFP YVSFSPGFNP TGFSPPSLPN SQAPPPAAAD  120
VFTVAPSSQS NSAFAVPSQL SPGDYVLQCA RSPLSSGLAE LLDQSQQVPG DGWGGPLTSD  180
LFSTSPSPRS EDCFAELAQL LLSGQPSGAP ADDGGGGGCV AETCSNGRRD PSCVENGQQD  240
SRSGARLGHE GSYSPVPVQC TSADLSGGGK RVYSLQDEYP RMRKPVDSEV VSAGQEREVK  300
RAADGHIGSN RKHINPVETS VPFKQQLMQA LQIIGGSCAD VLAQVWMPVV KKDGLVVLVT  360
KEQPFVLKHC NDQLLYYRSI SEQYNFAVAG GHPGLPGRVF LHHVPEWTPN VQFYSSQEFL  420
RVKYAQEFDV RGTLAVPVFE PASHTCLAVI ELVRMSEKVE YAPEIDIICQ ALRAVNLACS  480
DGVEFPVQDT MHRMQTQGRQ AALVEIAEVL TAVCETHKLP LAQTWVRGCH QVIDESSGKT  540
QIKKGVGSST SSHGNRVFLR TGDGPHYLTD HNLQGFRHAC LEHFLEEGQG VAGKAFQSNQ  600
PCFVSDVKNY SKVEYPLGHY ARLFSLGAAV AIRLRSMYTG TDDFVLEFFL PLKCNNSQDQ  660
QVLLNSLSVI MQRVCRSLRT VSDNELEEEK SAVHLEEGTE VDSKSPELAD VAGEGALVVH  720
ASMPVVEDML KAHTPPSQQT QEPTALQDQQ QQVIAPLQCR LPHQESHDWV EELHTEEVRQ  780
PMEEVQEQEF ASTQEQGVEA STSTSLAQDI ANTRQRLDRR RGTTEKTIGL NVLQQYFAGS  840
LKDAAKSIGV CPTTLKRICR QHGISRWPSR KINKVSRSLK KLQGVIDSVP VADGTLCINP  900
HSGDLVSANV ASATMMQAQE QEEVPAGKRN LSQSCSVPPP NHCDTNTDTD QPLALKDAPL  960
SFQAVHVSNK QSAGTGVESL KHSDENSGES TGAGHDSTNS ESGERCGALL SKHESADASP  1020
TAEEPIITAG ARTDMPAQNS PALAMGNGSS NRSLHERSPG RSLFSKFVGG ASLGTVAGSR  1080
LSDSICAESR VHGGAGALTA LKGSQGPSSS IQNASVRSSR TFGEANYVQD EPGDDREVNC  1140
QMDSEDSEPS GASNALGASD CSFPLSAVGG AYDKRWSMLP EVKRVTVKAT LGSDTVRFKL  1200
PLDAGYLELR RAIGSKLELE EQTLHLKYLD DEDEWMLLNS DADLMECIEV MQTSGAHIIK  1260
LMVHSSHSTK IPHDNLNSRT L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-141	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0005s0024.1.p