PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0004s0331.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20754.3 Da PI: 7.8233 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.2 | 2.5e-42 | 13 | 113 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq ++ Sphfalx0004s0331.2.p 13 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKIFGASNVSKMLMEVPESQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQS 101 7**************************************************************************************** PP DUF260 90 lkaelallkeel 101 l+ael+++++e+ Sphfalx0004s0331.2.p 102 LQAELNAVRQEI 113 ********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.558 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-42 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVGNQGQVNS STPCAACKLL RRRCAQECPF SPYFSPHEPQ KFACVHKIFG ASNVSKMLME 60 VPESQRADAA SSLVYEANAR IRDPVYGCMG AISALQQQAQ SLQAELNAVR QEIMRYRRHD 120 NAVADAATAD ATAAMMVQTS GYQGHSLHDR GVTSNPLSTQ TTPSEVYTVP SPNSVTTPDL 180 KERSYWSPLN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-47 | 9 | 116 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-47 | 9 | 116 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362454.1 | 3e-81 | LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 2e-61 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2R6WX81 | 3e-87 | A0A2R6WX81_MARPO; Uncharacterized protein | ||||
STRING | PP1S156_26V6.1 | 1e-80 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-61 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0004s0331.2.p |
Publications ? help Back to Top | |||
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