PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0004s0230.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | MYB_related | ||||||||
Protein Properties | Length: 1027aa MW: 115256 Da PI: 4.8454 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.6e-09 | 281 | 328 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 r rW++eE+e l++ +++G+g+Wk I + + +R+ q+k++++ Sphfalx0004s0230.2.p 281 RRRWSAEEEESLKRSLQRFGPGCWKEIKENEPalANRSTAQIKDKFRL 328 78*******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00085 | 0.00856 | 127 | 164 | No hit | No description |
SMART | SM00717 | 2.0E-6 | 280 | 332 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.81E-9 | 280 | 342 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-10 | 281 | 327 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-8 | 281 | 327 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.352 | 281 | 330 | IPR017877 | Myb-like domain |
CDD | cd11660 | 2.42E-14 | 282 | 330 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1027 aa Download sequence Send to blast |
MFAKLALTEE EKTVDEQLGY PHGYAKLCRC HASTAELQHG LQLTPFTEGP PQRFLPYSPQ 60 AEDFVKLKEW DSLFPVIVEE ADTRGPPNAR KHAEELWQQL NHLGNAGFDP AKFRVDAYGN 120 VVYWNADPSS PLAWEVDHWY PHSRGGKTVV SNLRVVQWQA HQRKKNRLEF LVPWWDLQHG 180 VSINQFLSAF ASKNSDFRRR SFALFFAGGE DEKVAREHVG ECRPWPQQFR EKKVLCGLAA 240 AAIVSALRED NEDMLNIAQS TRAAFASSVT VTPTALGTAV RRRWSAEEEE SLKRSLQRFG 300 PGCWKEIKEN EPALANRSTA QIKDKFRLMR GEWKSGKENI AISTSCNGRS EYLDEQSAAT 360 INLQKELRVK IMREEEKREK EEDISQLEET VATLRQQNEK ERLALLELED VLRNQKQEVE 420 KHRRWAETQS SYRLCLERMI RDIMHQSMAY KEQARLNQAA CNALMAHLDC QKVTCDAVEK 480 DLLQCHSHRE ALAATLSSDT RQIDETPCLQ GQNIVDVSSC VSLFVTNENH EGGSGKRGSV 540 NEVKSASDAT LYQDAKAPDQ EEEWVQLLKV EERAREDEAN AELDNENGCE GMEGESDFAD 600 DEMSCDLHGV QDALVTEQVI KIEMDGGDQK GEGSSGGTED DTSIIPDGYS GHPLASEALI 660 EELLVDKSRP DCKQEDQKNV IIEQTQRNAV AREVRIHCGA QQTYKHTAEL LQQVRLQMKM 720 TEVSEGRVDD CQPSCEQEEK FDELLQQVLT THVNRVQRNE AGAEQGSDSQ DEEQWQIGKS 780 NLDKWLQVLL QNDGDSAGSF PAHDSPLHNV FSPALSTARA STTGSVDLED SLKKAGENTG 840 KPKGLWGGLL RKLSAKQQTE LSRHLREETG EEPRGLQTRN KDEDLTYVLN SLKNIMLNED 900 NEAKSKPFEF SHEAIGVQGG EADHMLRDAT EPIPVAEAPA FNAEEGVTAC DLDTHLIFTH 960 KRSATETDTE SLSSTNNPDS QSLEGKDMSK TGFRASIKAA THVWRKAVKK LEMKLQEGLT 1020 APPLLD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 289 | 294 | ESLKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358211.1 | 0.0 | uncharacterized protein LOC112273539 | ||||
TrEMBL | A0A2K1ITK5 | 0.0 | A0A2K1ITK5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S305_38V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0004s0230.2.p |