PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0004s0230.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 1082aa MW: 121819 Da PI: 4.7258

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0004s0230.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.7e-09	281	328	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 r rW++eE+e l++ +++G+g+Wk I + + +R+ q+k++++ Sphfalx0004s0230.1.p 281 RRRWSAEEEESLKRSLQRFGPGCWKEIKENEPalANRSTAQIKDKFRL 328 78*******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00085	0.00967	127	164	No hit	No description
SuperFamily	SSF46689	4.04E-9	280	342	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-6	280	332	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-10	281	327	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.352	281	330	IPR017877	Myb-like domain
Pfam	PF00249	3.8E-8	281	327	IPR001005	SANT/Myb domain
CDD	cd11660	2.68E-14	282	330	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1082 aa Download sequence Send to blast
MFAKLALTEE EKTVDEQLGY PHGYAKLCRC HASTAELQHG LQLTPFTEGP PQRFLPYSPQ 60 AEDFVKLKEW DSLFPVIVEE ADTRGPPNAR KHAEELWQQL NHLGNAGFDP AKFRVDAYGN 120 VVYWNADPSS PLAWEVDHWY PHSRGGKTVV SNLRVVQWQA HQRKKNRLEF LVPWWDLQHG 180 VSINQFLSAF ASKNSDFRRR SFALFFAGGE DEKVAREHVG ECRPWPQQFR EKKVLCGLAA 240 AAIVSALRED NEDMLNIAQS TRAAFASSVT VTPTALGTAV RRRWSAEEEE SLKRSLQRFG 300 PGCWKEIKEN EPALANRSTA QIKDKFRLMR GEWKSGKENI AISTSCNGRS EYLDEQSAAT 360 INLQKELRVK IMREEEKREK EEDISQLEET VATLRQQNEK ERLALLELED VLRNQKQEVE 420 KHRRWAETQS SYRLCLERMI RDIMHQSMAY KEQARLNQAA CNALMAHLDC QKVTCDAVEK 480 DLLQCHSHRE ALAATLSSDT RQIDETPCLQ GQNIVDVSSC VSLFVTNENH EGDESVHRED 540 VEYERDGCSD REDEKAHEIY KLQMQLSQSQ ELQQVEQEYL DNYSVTGGSG KRGSVNEVKS 600 ASDATLYQDA KAPDQEEEWV QLLKVEERAR EDEANAELDN ENGCEGMEGE SDFADDEMSC 660 DLHGVQDALV TEQVIKIEMD GGDQKGEGSS GGTEDDTSII PDGYSGHPLA SEALIEELLV 720 DKSRPDCKQE DQKNVIIEQT QRNAVAREVR IHCGAQQTYK HTAELLQQVR LQMKMTEVSE 780 GRVDDCQPSC EQEEKFDELL QQVLTTHVNR VQRNEAGAEQ GSDSQDEEQW QIGKSNLDKW 840 LQVLLQNDGD SAGSFPAHDS PLHNVFSPAL STARASTTGS VDLEDSLKKA GENTGKPKGL 900 WGGLLRKLSA KQQTELSRHL REETGEEPRG LQTRNKDEDL TYVLNSLKNI MLNEDNEAKS 960 KPFEFSHEAI GVQGGEADHM LRDATEPIPV AEAPAFNAEE GVTACDLDTH LIFTHKRSAT 1020 ETDTESLSST NNPDSQSLEG KDMSKTGFRA SIKAATHVWR KAVKKLEMKL QEGLTAPPLL 1080 D*

Sequence ? help Back to Top

Protein Sequence Length: 1082 aa Download sequence Send to blast

MFAKLALTEE EKTVDEQLGY PHGYAKLCRC HASTAELQHG LQLTPFTEGP PQRFLPYSPQ  60
AEDFVKLKEW DSLFPVIVEE ADTRGPPNAR KHAEELWQQL NHLGNAGFDP AKFRVDAYGN  120
VVYWNADPSS PLAWEVDHWY PHSRGGKTVV SNLRVVQWQA HQRKKNRLEF LVPWWDLQHG  180
VSINQFLSAF ASKNSDFRRR SFALFFAGGE DEKVAREHVG ECRPWPQQFR EKKVLCGLAA  240
AAIVSALRED NEDMLNIAQS TRAAFASSVT VTPTALGTAV RRRWSAEEEE SLKRSLQRFG  300
PGCWKEIKEN EPALANRSTA QIKDKFRLMR GEWKSGKENI AISTSCNGRS EYLDEQSAAT  360
INLQKELRVK IMREEEKREK EEDISQLEET VATLRQQNEK ERLALLELED VLRNQKQEVE  420
KHRRWAETQS SYRLCLERMI RDIMHQSMAY KEQARLNQAA CNALMAHLDC QKVTCDAVEK  480
DLLQCHSHRE ALAATLSSDT RQIDETPCLQ GQNIVDVSSC VSLFVTNENH EGDESVHRED  540
VEYERDGCSD REDEKAHEIY KLQMQLSQSQ ELQQVEQEYL DNYSVTGGSG KRGSVNEVKS  600
ASDATLYQDA KAPDQEEEWV QLLKVEERAR EDEANAELDN ENGCEGMEGE SDFADDEMSC  660
DLHGVQDALV TEQVIKIEMD GGDQKGEGSS GGTEDDTSII PDGYSGHPLA SEALIEELLV  720
DKSRPDCKQE DQKNVIIEQT QRNAVAREVR IHCGAQQTYK HTAELLQQVR LQMKMTEVSE  780
GRVDDCQPSC EQEEKFDELL QQVLTTHVNR VQRNEAGAEQ GSDSQDEEQW QIGKSNLDKW  840
LQVLLQNDGD SAGSFPAHDS PLHNVFSPAL STARASTTGS VDLEDSLKKA GENTGKPKGL  900
WGGLLRKLSA KQQTELSRHL REETGEEPRG LQTRNKDEDL TYVLNSLKNI MLNEDNEAKS  960
KPFEFSHEAI GVQGGEADHM LRDATEPIPV AEAPAFNAEE GVTACDLDTH LIFTHKRSAT  1020
ETDTESLSST NNPDSQSLEG KDMSKTGFRA SIKAATHVWR KAVKKLEMKL QEGLTAPPLL  1080
D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	294	ESLKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392370.1	0.0	uncharacterized protein LOC112290409
STRING	PP1S305_38V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Sphfalx0004s0230.1.p