PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0004s0125.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 428aa MW: 45811.1 Da PI: 6.511 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.9 | 3.1e-30 | 241 | 294 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Sphfalx0004s0125.1.p 241 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 294 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.04E-19 | 238 | 298 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.927 | 238 | 297 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-30 | 240 | 299 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.0E-24 | 242 | 294 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-7 | 244 | 293 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MMVKEDDAHV SEWEDGLPTD EELTPLSHSL ISPALASAFS IEHEPAKTAM DVQRGSRDTL 60 HNLRNNKAPI TSFDSFPSFK GHENRGGHGY VGDARVGDGS GGSGKAVGGN GGIGSSNEAE 120 RVIGGANQPG PSSHPTGPYP VARAGLAAPG NYIGGSDETS FNPGDEQLDQ GSLPYMMSYA 180 GGSSYERRPE NSYGAIGDDS NKGGGTSKNV HKRGDSESED DDSAGGPENS GEEPNARTLK 240 RPRLVWTPQL HKRFVDAVGH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRMQ 300 GLSSEGPSAS DHLFASTPIP PNLGGPHYMP NHRDDVGPLP FASPNVPIPY TAIAPYPIGP 360 GHYGGYEQYP YSAVGRGLPQ QSPRGDHREA MMDNRNHQNH SHNYNHNHNQ PSSPPQRILT 420 LFPTSSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-33 | 241 | 297 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00014 | PBM | Transfer from AT3G46640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385661.1 | 1e-122 | uncharacterized protein LOC112287146 isoform X1 | ||||
TrEMBL | A0A2K1K355 | 1e-111 | A0A2K1K355_PHYPA; Uncharacterized protein | ||||
STRING | PP1S29_32V6.1 | 1e-121 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.3 | 8e-51 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0004s0125.1.p |