PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0004s0089.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 703aa MW: 76783.7 Da PI: 4.5419

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0004s0089.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	515	537	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k Fs++ L H++ H Sphfalx0004s0089.1.p 515 YDCHFCKKEFSSSQALGGHQNAH 537 88******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.89E-6	512	541	No hit	No description
PROSITE profile	PS50157	11.697	515	542	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	517	537	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009736	Biological Process	cytokinin-activated signaling pathway
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010090	Biological Process	trichome morphogenesis
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MTNLDVEFFS LLRRRRSSGS RKQGYEEEEG DDEEAFCCSE SENSCDDGQQ EQEEYEIAAS 60 MSFSSKRHRE EEEEEEKEEA HGRGGREFEE RSKLHLAPHS VLLAVGLQQQ QSADDEEEQK 120 EGDEEEQEQE EPLLSHKSCV QLDSRITMTT GKQVDRRRKE LKNLGQCSEA FLEPSLLACA 180 RHRGGSSQIS ISGDKEEEEE DAFQQLPLEE QDADGDAKMQ KDSILACGAE RGKLDHDDAV 240 GKETQGLNAS VVPSRGDDQS TLQQQQLPRA ISFFKEIKEN SSADLDLGGC FFRDDVGEEE 300 EEEYTSEQYC PDPSSCSSPR ASSARRCRRD HQDFVRKTGG GQEEVGSRGA QASCGGIDFL 360 QLETRKPWLS MGGGAQQNRV AGGGGGGEAV RLFGFEMNWR SMSGRSKDKE EEGCTENIGR 420 SNREKEQQQQ QQKGSQQSLP SCSSEGALDI DTVPEDAGEE EEAAVGVQPS KDSGVEAGKL 480 QCSSMSMPSI TNQPTEGISV CSGSTRVTSK ENRKYDCHFC KKEFSSSQAL GGHQNAHKRE 540 RKEDRRAQLQ AHRMAAAAAA AAAAANAHRD CGEMAGYSTT QHSLLPGSQL LQQQHPHGSH 600 LFAPPPGSGL IVPGQAYPHP NFSLQGCVNP PPMPEGMQAP PPGSIFYAGP VAIGFPGSRP 660 SFPTVFGDLV QYSDTIDYVQ YHPSACFQQV IHGFDTTVSN SG*

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MTNLDVEFFS LLRRRRSSGS RKQGYEEEEG DDEEAFCCSE SENSCDDGQQ EQEEYEIAAS  60
MSFSSKRHRE EEEEEEKEEA HGRGGREFEE RSKLHLAPHS VLLAVGLQQQ QSADDEEEQK  120
EGDEEEQEQE EPLLSHKSCV QLDSRITMTT GKQVDRRRKE LKNLGQCSEA FLEPSLLACA  180
RHRGGSSQIS ISGDKEEEEE DAFQQLPLEE QDADGDAKMQ KDSILACGAE RGKLDHDDAV  240
GKETQGLNAS VVPSRGDDQS TLQQQQLPRA ISFFKEIKEN SSADLDLGGC FFRDDVGEEE  300
EEEYTSEQYC PDPSSCSSPR ASSARRCRRD HQDFVRKTGG GQEEVGSRGA QASCGGIDFL  360
QLETRKPWLS MGGGAQQNRV AGGGGGGEAV RLFGFEMNWR SMSGRSKDKE EEGCTENIGR  420
SNREKEQQQQ QQKGSQQSLP SCSSEGALDI DTVPEDAGEE EEAAVGVQPS KDSGVEAGKL  480
QCSSMSMPSI TNQPTEGISV CSGSTRVTSK ENRKYDCHFC KKEFSSSQAL GGHQNAHKRE  540
RKEDRRAQLQ AHRMAAAAAA AAAAANAHRD CGEMAGYSTT QHSLLPGSQL LQQQHPHGSH  600
LFAPPPGSGL IVPGQAYPHP NFSLQGCVNP PPMPEGMQAP PPGSIFYAGP VAIGFPGSRP  660
SFPTVFGDLV QYSDTIDYVQ YHPSACFQQV IHGFDTTVSN SG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	1e-12	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0004s0089.1.p