PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0004s0083.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SBP

Protein Properties

Length: 673aa MW: 72119 Da PI: 6.4469

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0004s0083.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.1	9.3e-42	210	286	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+adls+ak+yhrrhkvCe+hska++++++g+eqrfCqqCsrfh l+efDe krsCrrrLa+hnerrrk++ Sphfalx0004s0083.2.p 210 RCQVEGCTADLSSAKDYHRRHKVCEMHSKASKAIAAGREQRFCQQCSRFHVLTEFDEIKRSCRRRLAGHNERRRKPH 286 6**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.6E-35	206	272	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	33.291	208	285	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-39	209	288	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-31	211	284	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MAMAMTEAHE RRWINTTWEL QQQQNPENSE GMRDGEAGAG GDYGSALLSS RVDWDLKDWE 60 SITLAYPTSD ENCCSSSSLP ETVMVSAAVV KSEPQAEVEE SEEEEEDEVV HQAPEAAAAA 120 PLKLGLKLGR RSSSSSTEKN KKEKSVSQGS CSTTTPTAAI APPPAAVAVA VAAGSSSSSP 180 PSTKKQRVTS PSSAAAAAGG GIQNPAPPPR CQVEGCTADL SSAKDYHRRH KVCEMHSKAS 240 KAIAAGREQR FCQQCSRFHV LTEFDEIKRS CRRRLAGHNE RRRKPHLESS SSAAAAAAAS 300 NLSFNCRISS PMRSTDAFHI HGTAADSLSL DDCKQTQFLE QIQGSQGGGR PLSSPDLHDD 360 DEHSNHHHPF ANVLNLSSPW RPGENVRSPQ HIQQVEEKEG QLMMLDRRYG TPSSNRLLMF 420 LQSPRGQMRG ALDPSPDVGL SNLSPLVVGG GGSSQEFVDG AKGSLCQNLS LGGGGGWENN 480 NHHNYHHNQG CESQSSGCAL SLLSWGTTPC PPALDLCVDN TSLDHHHHHQ LVADNNMGSN 540 TVASFATHHL PQQQSQEHYL AFEKLFSAQS GSLGAMGISD IRITDIQQQQ QPLEQSQLHG 600 VGGGGGGGDD GASVCRCISS IISIRFILLL LLVCIRRCKH PSMEEEESMA SLVPRFVLLR 660 APCSAPNICS RS*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MAMAMTEAHE RRWINTTWEL QQQQNPENSE GMRDGEAGAG GDYGSALLSS RVDWDLKDWE  60
SITLAYPTSD ENCCSSSSLP ETVMVSAAVV KSEPQAEVEE SEEEEEDEVV HQAPEAAAAA  120
PLKLGLKLGR RSSSSSTEKN KKEKSVSQGS CSTTTPTAAI APPPAAVAVA VAAGSSSSSP  180
PSTKKQRVTS PSSAAAAAGG GIQNPAPPPR CQVEGCTADL SSAKDYHRRH KVCEMHSKAS  240
KAIAAGREQR FCQQCSRFHV LTEFDEIKRS CRRRLAGHNE RRRKPHLESS SSAAAAAAAS  300
NLSFNCRISS PMRSTDAFHI HGTAADSLSL DDCKQTQFLE QIQGSQGGGR PLSSPDLHDD  360
DEHSNHHHPF ANVLNLSSPW RPGENVRSPQ HIQQVEEKEG QLMMLDRRYG TPSSNRLLMF  420
LQSPRGQMRG ALDPSPDVGL SNLSPLVVGG GGSSQEFVDG AKGSLCQNLS LGGGGGWENN  480
NHHNYHHNQG CESQSSGCAL SLLSWGTTPC PPALDLCVDN TSLDHHHHHQ LVADNNMGSN  540
TVASFATHHL PQQQSQEHYL AFEKLFSAQS GSLGAMGISD IRITDIQQQQ QPLEQSQLHG  600
VGGGGGGGDD GASVCRCISS IISIRFILLL LLVCIRRCKH PSMEEEESMA SLVPRFVLLR  660
APCSAPNICS RS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-32	211	284	11	84	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-34	SBP family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0004s0083.2.p