PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0004s0083.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | SBP | ||||||||
Protein Properties | Length: 673aa MW: 72119 Da PI: 6.4469 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.1 | 9.3e-42 | 210 | 286 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+adls+ak+yhrrhkvCe+hska++++++g+eqrfCqqCsrfh l+efDe krsCrrrLa+hnerrrk++ Sphfalx0004s0083.1.p 210 RCQVEGCTADLSSAKDYHRRHKVCEMHSKASKAIAAGREQRFCQQCSRFHVLTEFDEIKRSCRRRLAGHNERRRKPH 286 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.6E-35 | 206 | 272 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 33.291 | 208 | 285 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-39 | 209 | 288 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-31 | 211 | 284 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MAMAMTEAHE RRWINTTWEL QQQQNPENSE GMRDGEAGAG GDYGSALLSS RVDWDLKDWE 60 SITLAYPTSD ENCCSSSSLP ETVMVSAAVV KSEPQAEVEE SEEEEEDEVV HQAPEAAAAA 120 PLKLGLKLGR RSSSSSTEKN KKEKSVSQGS CSTTTPTAAI APPPAAVAVA VAAGSSSSSP 180 PSTKKQRVTS PSSAAAAAGG GIQNPAPPPR CQVEGCTADL SSAKDYHRRH KVCEMHSKAS 240 KAIAAGREQR FCQQCSRFHV LTEFDEIKRS CRRRLAGHNE RRRKPHLESS SSAAAAAAAS 300 NLSFNCRISS PMRSTDAFHI HGTAADSLSL DDCKQTQFLE QIQGSQGGGR PLSSPDLHDD 360 DEHSNHHHPF ANVLNLSSPW RPGENVRSPQ HIQQVEEKEG QLMMLDRRYG TPSSNRLLMF 420 LQSPRGQMRG ALDPSPDVGL SNLSPLVVGG GGSSQEFVDG AKGSLCQNLS LGGGGGWENN 480 NHHNYHHNQG CESQSSGCAL SLLSWGTTPC PPALDLCVDN TSLDHHHHHQ LVADNNMGSN 540 TVASFATHHL PQQQSQEHYL AFEKLFSAQS GSLGAMGISD IRITDIQQQQ QPLEQSQLHG 600 VGGGGGGGDD GASVCRCISS IISIRFILLL LLVCIRRCKH PSMEEEESMA SLVPRFVLLR 660 APCSAPNICS RS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-32 | 211 | 284 | 11 | 84 | squamosa promoter binding protein-like 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-34 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0004s0083.1.p |