PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0004s0020.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 326aa    MW: 36053.4 Da    PI: 6.9188
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0004s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.83.2e-42121121101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           aCaaCk++rrkC++dC+l+pyfpa+qpk+fanvhklFG+sn l++lk++++++red+++s++yeA+ r +dPv+G++gvi+ lq+++++
  Sphfalx0004s0020.1.p  12 ACAACKYQRRKCTPDCPLSPYFPADQPKRFANVHKLFGVSNTLRILKHVDPSKREDTVKSIAYEADTREKDPVHGCLGVITLLQHEVSK 100
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkeel 101
                           lk ela+++e+l
  Sphfalx0004s0020.1.p 101 LKDELAMAREQL 112
                           *******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.01111112IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-4112109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTAGSASGTN TACAACKYQR RKCTPDCPLS PYFPADQPKR FANVHKLFGV SNTLRILKHV  60
DPSKREDTVK SIAYEADTRE KDPVHGCLGV ITLLQHEVSK LKDELAMARE QLYTLRQQQS  120
FESQELQLQN TVAASPAAVP TGVHVDPAIQ VTDVAFLRQL QNYAGFGNNQ LSAGTSFDDQ  180
LYLRHESFDP PKLQTAAYHD LHRYGEGDSS SLQLQAASAM GQIKLVDRAD QLRSCSYLIG  240
AAFRPNQLDD SSVNHHQMHQ QAALEQERMS MHTSALVPRG QVSLTVTSED DLRRANYLSG  300
HDSVPDHELR VRAGVYLTLT NQHIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3731122111LOB family transfactor Ramosa2.1
5ly0_B7e-3731122111LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357789.11e-91LOB domain-containing protein 22-like isoform X1
RefseqXP_024357790.11e-91LOB domain-containing protein 22-like isoform X1
TrEMBLA0A2K1IUQ93e-90A0A2K1IUQ9_PHYPA; Uncharacterized protein
STRINGPP1S9_450V6.15e-91(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.17e-39LOB domain-containing protein 25