PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0003s0295.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 608aa MW: 67257.9 Da PI: 6.766

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0003s0295.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.9	2.5e-13	211	288	2	71
trihelix 2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W++ e aL++a+re++ +l ++ k++ +W+ev + +g+ r+pk+ + kw+nl++ +k+i++++kk Sphfalx0003s0295.1.p 211 WQDAEMDALVRAYREVHMKLAAAgkkgkqvfKSATDKWKEVQTLLFNEGVDRQPKEIERKWSNLSTAFKQIADWNKKV 288 ******************98534344444599****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.0E-10	210	297	No hit	No description
Gene3D	G3DSA:3.40.50.620	1.2E-76	383	598	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold
SuperFamily	SSF52374	2.28E-49	386	601	No hit	No description
TIGRFAMs	TIGR00482	1.4E-44	391	598	IPR005248	Probable nicotinate-nucleotide adenylyltransferase
Pfam	PF01467	1.4E-24	391	572	IPR004821	Cytidyltransferase-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009435	Biological Process	NAD biosynthetic process
GO:0009555	Biological Process	pollen development
GO:0009860	Biological Process	pollen tube growth
GO:0000309	Molecular Function	nicotinamide-nucleotide adenylyltransferase activity
GO:0004515	Molecular Function	nicotinate-nucleotide adenylyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MEQAAANRPA MEASLPNSDI EQTHTGYVAP AYGRNAYGAE RQVAYAREGF ARDAQSFPPP 60 YVDRSSYPHH DGYPRDGAPK DVEVFHRDSR SMHESMRDDD TGNKKQKGAD WWHESQGSEQ 120 PSEAPKDMAP TVNSHAAPAV PSFGGIDLPG MLLQSQMLGA ECQAGSMEEG ECGGSSGGGV 180 GIGEEGDDGD GDGKERPDKE GCAKKKRAEM WQDAEMDALV RAYREVHMKL AAAGKKGKQV 240 FKSATDKWKE VQTLLFNEGV DRQPKEIERK WSNLSTAFKQ IADWNKKVGR PNYWELDETL 300 KKEKTKAKEL PATFRVQLFD TMAEFLGDRV GTHRSRSPAP SHMTLPGLVC AVNASGGPGV 360 VEVTLPIDKL SLHAPPMDTY QKHVRVVLVS TGSFNPPTYM HLRMFELARD ALLNEGYYLL 420 GGYMSPVGDA YDKKGLAPAE HRIKMCQLAT QDSPFVMVDP WEAKQSSYQR TLTVLSRVEA 480 AVNSHGFAAQ EKVKVMLLCG TDLLQSVTKP GVWLPEQVRA LLQEHGVVCI CSSGQDTRQL 540 LFEHDILFNN RRQIMIVDEL IHNDVSSTKV RRNITRGLSV KYLIADSVIN YIKTHQLYTT 600 NPVAHQA*

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MEQAAANRPA MEASLPNSDI EQTHTGYVAP AYGRNAYGAE RQVAYAREGF ARDAQSFPPP  60
YVDRSSYPHH DGYPRDGAPK DVEVFHRDSR SMHESMRDDD TGNKKQKGAD WWHESQGSEQ  120
PSEAPKDMAP TVNSHAAPAV PSFGGIDLPG MLLQSQMLGA ECQAGSMEEG ECGGSSGGGV  180
GIGEEGDDGD GDGKERPDKE GCAKKKRAEM WQDAEMDALV RAYREVHMKL AAAGKKGKQV  240
FKSATDKWKE VQTLLFNEGV DRQPKEIERK WSNLSTAFKQ IADWNKKVGR PNYWELDETL  300
KKEKTKAKEL PATFRVQLFD TMAEFLGDRV GTHRSRSPAP SHMTLPGLVC AVNASGGPGV  360
VEVTLPIDKL SLHAPPMDTY QKHVRVVLVS TGSFNPPTYM HLRMFELARD ALLNEGYYLL  420
GGYMSPVGDA YDKKGLAPAE HRIKMCQLAT QDSPFVMVDP WEAKQSSYQR TLTVLSRVEA  480
AVNSHGFAAQ EKVKVMLLCG TDLLQSVTKP GVWLPEQVRA LLQEHGVVCI CSSGQDTRQL  540
LFEHDILFNN RRQIMIVDEL IHNDVSSTKV RRNITRGLSV KYLIADSVIN YIKTHQLYTT  600
NPVAHQA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gzu_B	1e-56	386	600	20	267	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_C	1e-56	386	600	20	267	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_A	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_B	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_C	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_D	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_E	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_F	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_A	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_B	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_C	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_D	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_E	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_F	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_A	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_B	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_C	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_D	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_E	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_F	1e-56	386	600	9	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358097.1	0.0	uncharacterized protein LOC112273477 isoform X5
Refseq	XP_024358098.1	0.0	uncharacterized protein LOC112273477 isoform X5
TrEMBL	A0A2K1IWA5	0.0	A0A2K1IWA5_PHYPA; Uncharacterized protein
STRING	PP1S241_77V6.2	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Sphfalx0003s0295.1.p