PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0234.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 1009aa    MW: 112529 Da    PI: 9.5904
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0234.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.6e-1061150499
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +l++ ++ k++ +++p  f+ee+g+       ++l+ + g + +v l  +  +   + ++GW++F + +++++ D ++ +l+ +s f  
  Sphfalx0003s0234.1.p  61 KLIRMSHIKKNFMRIPIIFMEEYGYRVGD--NVVLQGPGGYTIDVGL--SHDQHFGFARAGWRQFLRHHNIEVDDYILCTLIADSYF-- 143
                           466778889999***********988544..7***************..5555556789***********************99999.. PP

                           EEEEE-S CS
                    B3  93 vvkvfrk 99 
                           +vk+f+k
  Sphfalx0003s0234.1.p 144 TVKIFNK 150
                           9999987 PP
2B351.71.5e-1636244612100
                           HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
                    B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                            ++ +++pk+fa++   k  ++ +++l d + ++W+v+   + + ++++l++GWk+F   +gL+egD++vF+l++ +e  l v++frks
  Sphfalx0003s0234.1.p 362 VNNSVYFPKDFAKKWFPK--QKAEIQLVDADDNRWSVTS--KPYMNHTTLAGGWKRFTIKQGLEEGDVLVFELKNPNEIALQVHFFRKS 446
                           567899******999633..5568***************..*******************************98889999*****9985 PP
3B351.61.7e-165335973096
                           ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           + ++++ +l+d+ g++W  k  ++ +++r  +++GWk+Fv +++L+egD++vF+l++++e +l++++
  Sphfalx0003s0234.1.p 533 PDKTTDAILKDPAGQKWPAKWLVNAGGKR--FSAGWKRFVTDHKLEEGDVCVFELIDSKELTLLIHI 597
                           3356789**************55555555..89***********************99999999987 PP
4B339.31.1e-12691782398
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.se 89 
                            vlt+s+v ++ +++lp++f    ++ +++++t+tl d +g++++ +   + + ++ +l+   k+F  ++ L+egD++vF+ l+++ ++
  Sphfalx0003s0234.1.p 691 VVLTNSSVYRHFIVTLPNTFK---DLLPQKHVTITLLDVHGQKFKARW--TVNERAKLLK-SFKRFSLSHCLEEGDVCVFEfLSWNpEN 773
                           5899****************7...44456899****************..8887776666.9*******************66698777 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                             ++v++fr
  Sphfalx0003s0234.1.p 774 PVFRVHIFR 782
                           777888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-1954153IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-1755153IPR015300DNA-binding pseudobarrel domain
CDDcd100174.68E-1057149No hitNo description
PROSITE profilePS508639.06558151IPR003340B3 DNA binding domain
SMARTSM010198.9E-959151IPR003340B3 DNA binding domain
PfamPF023621.2E-762150IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-19344446IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-19345446IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.578351446IPR003340B3 DNA binding domain
SMARTSM010193.4E-11354446IPR003340B3 DNA binding domain
PfamPF023625.4E-14363445IPR003340B3 DNA binding domain
CDDcd100172.61E-14367444No hitNo description
Gene3DG3DSA:2.40.330.109.0E-20502596IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-19503595IPR015300DNA-binding pseudobarrel domain
CDDcd100176.34E-19508597No hitNo description
SMARTSM010192.2E-10510601IPR003340B3 DNA binding domain
PfamPF023621.2E-14524597IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139540599IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-13679793IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-15685782IPR015300DNA-binding pseudobarrel domain
CDDcd100177.90E-17687782No hitNo description
SMARTSM010191.0E-4689784IPR003340B3 DNA binding domain
PROSITE profilePS508638.67689784IPR003340B3 DNA binding domain
PfamPF023621.5E-10691782IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MIQSSNKSFK KLGGRMVEGQ GVPADGDEFR ACRICACKCR EIHGKAEEVG GQTRSTPSFW  60
KLIRMSHIKK NFMRIPIIFM EEYGYRVGDN VVLQGPGGYT IDVGLSHDQH FGFARAGWRQ  120
FLRHHNIEVD DYILCTLIAD SYFTVKIFNK TGCEKPLSAP SMTAGGGSEK LDNLQVGDDG  180
NWVSPAHMQS AGEKKPSPHI KTPTRTEMKG GLKRKYAAQG EPSLLQYAKK HCTTNGETVK  240
DCQDREEDAK SMMDVEEEPL VSMAPHSSNR GVSDTENKKK IEENESSTPP HSRMNGSQAC  300
MENSLFSISD GLPQEVSVTG SQKLSGSLQK MDTTTLAALQ SANAFKSKNP STVLVVNRTA  360
IVNNSVYFPK DFAKKWFPKQ KAEIQLVDAD DNRWSVTSKP YMNHTTLAGG WKRFTIKQGL  420
EEGDVLVFEL KNPNEIALQV HFFRKSSYVN FGEGFGEAGG SSVQDQEKLP SSKTRPCGKI  480
SRTRRRPPTE VEREKAWEAA NAIQTKQPSV LVTMKPSHVC AGFSMPISLK EMPDKTTDAI  540
LKDPAGQKWP AKWLVNAGGK RFSAGWKRFV TDHKLEEGDV CVFELIDSKE LTLLIHISPV  600
VMEDDPDSPP RALKSRGLAN NLTIQKNPLC TSFQSEQMPR VRQPEAYKSP MLQKGGKTSF  660
VSLRRPVTEK ERRQAETAAR ALKTANPSAV VVLTNSSVYR HFIVTLPNTF KDLLPQKHVT  720
ITLLDVHGQK FKARWTVNER AKLLKSFKRF SLSHCLEEGD VCVFEFLSWN PENPVFRVHI  780
FRVVDLKGGS SCRPDDWRTH YQINRQPKPY TPEMPLGLRR ATEKMNLPNL ENRNQETDSA  840
TATGSQLQNN GSQMLDSKVS TKQLRKLATK AIYSALLKCK AKSQQGRMEQ RLQVDAGNVS  900
APDPKSSTRS LASERRPLMS NGTSEEKQVL PLKVPKCEPQ MTCLAAVRPT TEHLPKIPKA  960
EPVEVTGTGA DGAPLWEPEG FTYKYTYMTE TDLTQYLKQQ GMAKSADC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1348159520137B3 domain-containing transcription factor VRN1
4i1k_B1e-1348159520137B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-13related to vernalization1 1