PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0142.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 709aa    MW: 76503.3 Da    PI: 6.5065
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0142.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.3e-083071439
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                          r C+ ++ ++++++C  ++ +lC+ C ++ H g       H++
  Sphfalx0003s0142.1.p 30 RACDMCGIQRARWYCAADEAYLCARCDTSVH-GantlalrHDR 71
                          67*****************************.54677777765 PP
2CCT67.53.6e-23661704144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+a++lRYkeKr tR+F+K+irY++RK +Ae+RpR+KGrFvk++
  Sphfalx0003s0142.1.p 661 RQARVLRYKEKRLTRLFSKTIRYQVRKLNAERRPRMKGRFVKRT 704
                           99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2672774IPR000315B-box-type zinc finger
SMARTSM003362.2E-62774IPR000315B-box-type zinc finger
PfamPF006434.4E-63071IPR000315B-box-type zinc finger
CDDcd000217.06E-53060No hitNo description
PROSITE profilePS5101715.309661703IPR010402CCT domain
PfamPF062032.3E-17661703IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MATKMMNKVV SSSSCVQATA MGAIAGRATR ACDMCGIQRA RWYCAADEAY LCARCDTSVH  60
GANTLALRHD RICLAPTHLH GFTPSAGGRL QQKAAFKLRS TTTTSRSSTI PSKTASKNGD  120
GVSEPDESPA AAAAYTARAV PPTSSDCEVP VLDPSPRARD QAVTIPSRKR SRTTRPHPHH  180
LRRLCSTAGG GGGGVRGAAA AGGAGPRPCK IQKLSSNCAV DESSMVQVKI ESLRDFMDCD  240
AMDLNDDPHK SYSSSFHGGA HEVPAFITVA GQDLLHGHHE DDPREISTPP RFKTSASAGN  300
ILQGAHYYSR NSALDSSRFS PFFKSKAAAQ AHAQLEDDQW GSDDAAAAED HENFLLVPDC  360
GCLDSGIDIC CDVDGTISLV EDASVHIKIK EEKNRQQQEE EIKTFSSSSK DQQLQQLDSS  420
SSKADESGAS TEFESATEFE GFRSPDFGPR DIMCDEFGLD FDFPVPGSSE SEVYCDEAHG  480
APAMGATVRT VAAAAAAAAA AAAPQLSHET ASPFAKFLPR LPRKIQEGRG ERRERVKKEA  540
EEILRCSLEE LSKEELQQVP CLRLDFQEVL NAWSDGDAFW IMDSGQKNSC SRQVPNWVDS  600
NATVLEEDCL LGLQKRRLEL VLPGTTTATD GEADFDRSHG GSEAAAIGGI AAAGEDVVVG  660
RQARVLRYKE KRLTRLFSKT IRYQVRKLNA ERRPRMKGRF VKRTSVNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1531538RRERVKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.11e-18B-box type zinc finger protein with CCT domain