PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0003s0126.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | MYB_related | ||||||||
Protein Properties | Length: 754aa MW: 80530.6 Da PI: 9.2686 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.6 | 3e-08 | 644 | 692 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lv++v++ Ggg W+ I + Rt+ ++k++w+++l Sphfalx0003s0126.2.p 644 PWTLREVMTLVEGVARCGGGKWADIKKLAFssvGYRTAVDLKDKWRNLL 692 8**************************98888889************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.135 | 637 | 696 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-12 | 638 | 694 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.32E-15 | 639 | 694 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-7 | 641 | 694 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.39E-21 | 643 | 693 | No hit | No description |
Pfam | PF00249 | 2.2E-6 | 644 | 692 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 754 aa Download sequence Send to blast |
MLEPTEDKSN EGPSSTVGER SPPVNKTVTT DRLVYKLVKV GDDGSVLPAT EDEVFQSLVE 60 GSSAGLPPSY AGGSDINEDD EDEEGSDVSL DSDEDDSDGK EDPSFPSEMD DLVAEKKKLL 120 SRLQVVDTML LRVDAEEQQR LSFEDQVGSV LGHESNSSAY LNAGDTSGDY KRQRRPNPKY 180 FDFNAGSDPV PSATILPMTL NPSVGEAAVI GTSPEKQSSG SGVIPRSTSG WGPQRSSIRT 240 AGAQRARTVL AQKPFIRTPS KVQAPRSVVS PAVNSMPDPS SLENLSIREL HEAFRSTYGR 300 DTSVKDKHWL KRQISAGWSK QHDAALNAGS RASQTDLKVR PEQQLSAEQS LPSSTTATIM 360 VSERDTVNEA QEPGRNGVES TEGLLTNDLD DKQSLHRSIP LAVISPVEGF NALTPSSLNE 420 VGAGGGQIAI FGEVVNTGKQ VGVKRQRKPN RRYVEDEGES SPGTVLGNGS RPGPVGSDSG 480 GHGLGTPSRL SWRTVVTDGP ADLIGRTGTL RGPTFQNASR ANTFQGQRTK PTNGTLKRKA 540 EGRAAKLVKM AHSAARAARH DTEGSARKVK FQLPAAPGRE KDGMYKLNGE AGDQVSCLLP 600 LSSGHSADLL QPLAPDSGAD AAGEQLVATV PTANGGTRRK HHRPWTLREV MTLVEGVARC 660 GGGKWADIKK LAFSSVGYRT AVDLKDKWRN LLRASRAQLY PPKQGERKKQ FTAAIPATIL 720 ARVRDLAALQ HQMPTGAGAA GSTSRSRRSV HRK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366866.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
Refseq | XP_024366994.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
Refseq | XP_024367079.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
Refseq | XP_024367147.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
TrEMBL | A9S2J5 | 0.0 | A9S2J5_PHYPA; Predicted protein | ||||
STRING | PP1S43_165V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-30 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0003s0126.2.p |