PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0126.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 778aa    MW: 83477 Da    PI: 9.9047
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0126.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-08668716348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           +WT  E   lv++v++ Ggg W+ I +        Rt+ ++k++w+++l
  Sphfalx0003s0126.1.p 668 PWTLREVMTLVEGVARCGGGKWADIKKLAFssvGYRTAVDLKDKWRNLL 716
                           8**************************98888889************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.135661720IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-12662718IPR009057Homeodomain-like
SuperFamilySSF466892.39E-15663718IPR009057Homeodomain-like
SMARTSM007171.6E-7665718IPR001005SANT/Myb domain
CDDcd116609.75E-21667717No hitNo description
PfamPF002492.3E-6668716IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MLEPTEDKSN EGPSSTVGER SPPVNKTVTT DRLVYKLVKV GDDGSVLPAT EDEVFQSLVE  60
GSSAGLPPSY AGGSDINEDD EDEEGSDVSL DSDEDDSDGK EDPSFPSEMD DLVAEKKKLL  120
SRLQVKGSRF QHPWMVKARR TKKHQDSRVV DTMLLRVDAE EQQRLSFEDQ VGSVLGHESN  180
SSAYLNAGDT SGDYKRQRRP NPKYFDFNAG SDPVPSATIL PMTLNPSVGE AAVIGTSPEK  240
QSSGSGVIPR STSGWGPQRS SIRTAGAQRA RTVLAQKPFI RTPSKVQAPR SVVSPAVNSM  300
PDPSSLENLS IRELHEAFRS TYGRDTSVKD KHWLKRQISA GWSKQHDAAL NAGSRASQTD  360
LKVRPEQQLS AEQSLPSSTT ATIMVSERDT VNEAQEPGRN GVESTEGLLT NDLDDKQSLH  420
RSIPLAVISP VEGFNALTPS SLNEVGAGGG QIAIFGEVVN TGKQVGVKRQ RKPNRRYVED  480
EGESSPGTVL GNGSRPGPVG SDSGGHGLGT PSRLSWRTVV TDGPADLIGR TGTLRGPTFQ  540
NASRANTFQG QRTKPTNGTL KRKAEGRAAK LVKMAHSAAR AARHDTEGSA RKVKFQLPAA  600
PGREKDGMYK LNGEAGDQVS CLLPLSSGHS ADLLQPLAPD SGADAAGEQL VATVPTANGG  660
TRRKHHRPWT LREVMTLVEG VARCGGGKWA DIKKLAFSSV GYRTAVDLKD KWRNLLRASR  720
AQLYPPKQGE RKKQFTAAIP ATILARVRDL AALQHQMPTG AGAAGSTSRS RRSVHRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366866.10.0uncharacterized protein LOC112278048 isoform X1
RefseqXP_024366994.10.0uncharacterized protein LOC112278048 isoform X1
RefseqXP_024367079.10.0uncharacterized protein LOC112278048 isoform X1
RefseqXP_024367147.10.0uncharacterized protein LOC112278048 isoform X1
TrEMBLA9S2J50.0A9S2J5_PHYPA; Predicted protein
STRINGPP1S43_165V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-30TRF-like 6