PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0003s0115.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 392aa MW: 41902.4 Da PI: 5.1574

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0003s0115.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.4	1.1e-36	65	124	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k ++cprC s+ntkfCy+nnys++qPryfC++C+ryWt GG+lrnvPvGgg+rk+ +s+ Sphfalx0003s0115.1.p 65 AKVIPCPRCASMNTKFCYFNNYSVKQPRYFCRQCQRYWTMGGTLRNVPVGGGSRKKSRSQ 124 67899**************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-21	63	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-32	66	122	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.764	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MQLSVNSDSA DVAGGGAGAQ QQQQQEEKVH GVDAAASSHV SLGGDSAGGG GSPGRGSDHV 60 LERPAKVIPC PRCASMNTKF CYFNNYSVKQ PRYFCRQCQR YWTMGGTLRN VPVGGGSRKK 120 SRSQRSEPYH NNRSAATQGG VPSSGALSSS SSSPALLQQT VGFQQLLMQD VNLPYNMTGY 180 EPQENYLEHL HNPAAGLFYP VMNKTQLMMS PHSEVSTMHA MYAAQGSNLA ANHPVVNTNG 240 SSYYSTLNGL ELQMNQGDNT IVGQVTQWGN SVPEDHGLQQ QAIWNESKHD DGSADLSANE 300 DEHNNIGNSP QDNHLHGKAE GDEACNMLSH LDSENKPSAQ EGSLAPNSSS PPHGSSTIDE 360 EGNTPTNGYS TNGYEEGDAV SSIWPDLEFF H*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MQLSVNSDSA DVAGGGAGAQ QQQQQEEKVH GVDAAASSHV SLGGDSAGGG GSPGRGSDHV  60
LERPAKVIPC PRCASMNTKF CYFNNYSVKQ PRYFCRQCQR YWTMGGTLRN VPVGGGSRKK  120
SRSQRSEPYH NNRSAATQGG VPSSGALSSS SSSPALLQQT VGFQQLLMQD VNLPYNMTGY  180
EPQENYLEHL HNPAAGLFYP VMNKTQLMMS PHSEVSTMHA MYAAQGSNLA ANHPVVNTNG  240
SSYYSTLNGL ELQMNQGDNT IVGQVTQWGN SVPEDHGLQQ QAIWNESKHD DGSADLSANE  300
DEHNNIGNSP QDNHLHGKAE GDEACNMLSH LDSENKPSAQ EGSLAPNSSS PPHGSSTIDE  360
EGNTPTNGYS TNGYEEGDAV SSIWPDLEFF H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	1e-26	Dof family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0003s0115.1.p