PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0102.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 791aa    MW: 80654.8 Da    PI: 9.9245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0580102123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F r  nL+ H r H
  Sphfalx0003s0102.1.p  80 FVCEICNKGFQRDQNLQLHRRGH 102
                           89******************988 PP
2zf-C2H2120.00063156178123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  Sphfalx0003s0102.1.p 156 WKCDKCSKRYAVQSDWKAHSKTC 178
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.33E-779102No hitNo description
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355220121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.33E-7151176No hitNo description
SMARTSM00355140156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MTLSNITSAS AGEASLSSGD GNNTALPPTS HPATPATTTT TVSSGQPPGP KRKRNLPGTP  60
DPEAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTSKEIRKRV  120
YICPEPSCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAEE SARVSAGKQH GGDSSSSLLV GPSMSVIGAP  240
SSPHSSNLGR MSGDHHPLHS VGGGGAGGGG GSMRPASLPP SMAGLGRLGE GGLSLLPPRW  300
GQSVVGNAPA TSGAAGTRLS LWLGPGPGSG GGGPGGIPGS QHVQLLPGSD LSSSFLMQPP  360
KAMQQQQQHG GGGGAAAGGM GAGILNPLEY DVPQAPRPPS SGLLPMVSSG SGSLFAHLFS  420
SAGTMPGLHG TAPANTSGAS MGMGISGFSD FTAGANQAER SGGSATAGLS LSSSAGLSSC  480
SSVYNDVVGS LSSTSMLFNQ QQQQQQQQHT ATAQMSATAL LQKAAQMGAT ASNSSLLRGY  540
GLGGGDSSSM SVWQGQRQDQ GRAIEIPTNK TNIVQPLQMR RPVEVAAGSP VGTSMGPSNF  600
GGSQGRSNND HHHHHQQQHH SAAAAAGVQD FMNSLSGGAG LFTAGPLGNM PSSMFGTNSG  660
NVGGMMPPSN RHHRMSSTNN VMGGHSPYPG GPVSQGMGPS MLPGLGSGAS TRGEDGSDRF  720
THDFLGVGGA SGMAAAAAAG GMGLTLSQRD LASITSLGPG VDLGAFFHQR ENLRSVGASG  780
HSPGKSWDAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36152216367Zinc finger protein JACKDAW
5b3h_F3e-36152216367Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.10.0protein indeterminate-domain 1-like isoform X1
TrEMBLA0A2K1L2D80.0A0A2K1L2D8_PHYPA; Uncharacterized protein
STRINGPP1S165_3V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-112C2H2 family protein