PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0024.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 517aa    MW: 57383.9 Da    PI: 4.4677
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.7e-35531442102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d++++ ++sws+ +nsfvv+++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  Sphfalx0003s0024.1.p  53 FLTKTYDMVDDHTTDAIVSWSTGSNSFVVWNPPEFSQELLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANECFLRGR 132
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           ++ll+ i+r+k 
  Sphfalx0003s0024.1.p 133 RDLLRGIHRRKP 144
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3946136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-6049142IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3449142IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-3153142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-195376IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434092116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-19104116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MVSQGMKMDA KWPSLEESME QAHSASTLDA LPISAASVPQ PMDGLQNTAP PPFLTKTYDM  60
VDDHTTDAIV SWSTGSNSFV VWNPPEFSQE LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR  120
WEFANECFLR GRRDLLRGIH RRKPTSQAQQ VQHQQEGEQS LLGPSLEIGK LGLEGEIEML  180
KKDKNVLMHE LVRLRQQQQN TEQDLRVMGQ RLQVTEQRQQ QMMTFLAKAM QNPAFLAQLM  240
QQSESNKRLA ATVRKKRRLP KQDEGGEDSL NADSPPDGQM VTFQPNGAGE PKGARSMLMQ  300
FLNALESSSP NHDSTPLDTL FRDMSSGMSI PEMNTLNRQS GVTLTEMQMS GLPDTLPVVT  360
DIPDESMLHI SPPPSLHIPR LEGGQSIEIS DKFFRTEASE HKEANDNYLD VNGESYKEEV  420
SSNVDSPVLS SAANDTFWEL FLSETLDSPV ASTDPNMDAE GPSETGALLL DGGAVDDGTN  480
VFTDLNAGDH LQAAQDNWSK ENVDQLSNQM GQLTPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-265114618123Heat shock factor protein 1
5d5u_B3e-265114227129Heat shock factor protein 1
5d5v_B3e-265114227129Heat shock factor protein 1
5d5v_D3e-265114227129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382543.10.0heat stress transcription factor A-1b-like
TrEMBLA0A2K1LAL80.0A0A2K1LAL8_PHYPA; Uncharacterized protein
STRINGPP1S249_84V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-81heat shock factor 3