PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0019.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 372aa    MW: 41466.4 Da    PI: 6.9565
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.98.1e-1685176186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr..tsessstcpyfd 83 
                           +W++  v+ L+++++e+  +l+rg+l++ +W ev+ ++  re g    +++kqCk k+enl++ryk +k+++ ++  +++s   +py+d
  Sphfalx0003s0019.1.p  85 EWSHGAVHSLLDIYEEKYLALQRGNLRGRHWHEVALHVsaREDGSksAKTSKQCKMKIENLKRRYKMEKTHRVGNpvSAGSNCCWPYYD 173
                           5************************************988555552278**********************99986456667779**** PP

              trihelix  84 qle 86 
                           +l+
  Sphfalx0003s0019.1.p 174 RLD 176
                           997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1985178No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVEDLCINTL LAVAMEEAMA SIGASDDQVS PFSTQQQYPE PHIIAPATEQ QQQQQKKKKT  60
SSSKRHRTAD VDDAPGEANR REYYEWSHGA VHSLLDIYEE KYLALQRGNL RGRHWHEVAL  120
HVSAREDGSK SAKTSKQCKM KIENLKRRYK MEKTHRVGNP VSAGSNCCWP YYDRLDSMLG  180
FTPKSNVGTQ KECGDTLSNS DPLLSHDVNL KLKARLSTDP TTEFQGESEM PSGIGKYEER  240
DVSADGGEGN PEQLPETAPV HHKDSKTDAS EVNTMLNLPG TSGVKQQSKP PVQSPLTNPG  300
VLLANSITAF AEVLVRIEQA KMELHKDLER QRTEADLRRT EMVLQNQLEI AKLFANSRKR  360
KARSPSLSES E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401476.11e-147trihelix transcription factor ASIL1-like
RefseqXP_024401477.11e-147trihelix transcription factor ASIL1-like
TrEMBLA0A2K1J4N71e-145A0A2K1J4N7_PHYPA; Uncharacterized protein
STRINGPP1S65_218V6.11e-146(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-31sequence-specific DNA binding transcription factors