PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0451.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 468aa    MW: 49250.8 Da    PI: 6.2717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0451.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.6e-08326366954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sphfalx0002s0451.1.p 326 ARHRRERISDRIRMLQRLVPGG-----TKMDTASMLDEAIHYVKFL 366
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13318375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-11319371No hitNo description
SuperFamilySSF474594.97E-14321381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5327366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTKNWSNQEE EVLQHSEVIT LHQAAKSKRR RRSGDRGGMF GLSGDDAGQV VVEEEKEERW  60
KLGGAGRNSH EVMLHAFATP ESFKGVVGDG GGYPVESSLL IQQQGSIAAA SSSMVDSSSE  120
LTTEGNVCGI GSAGAASSDG SLELRVGAST TLMDMLPGQT IIAAHESQQL SGLSPEVSPT  180
VSGSSASTAS GQNSGRVFSQ LHLTGLDEKA FVSQESSSLC ALTDSIGSSH AADPYLGVKS  240
SCALTGISGP TPAPVAGPTL FRFPGSQVVC EESNNIMMTV PDHMTAMLLR ASFPSNCAAG  300
DSSVEISGRP RRRNVRISKD PQSVAARHRR ERISDRIRML QRLVPGGTKM DTASMLDEAI  360
HYVKFLKLQL QALEQLGSSF DPTFTMGMPA FQPCTSQPDS HPNGGTWRPF DLNCATYNQL  420
AAAAAAASSP SSANASSNSG SPSHITGWPR ASSSMCFPDH AQEQFCH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-24bHLH family protein