PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0002s0406.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARF | ||||||||
Protein Properties | Length: 796aa MW: 88061 Da PI: 6.4198 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.7e-24 | 145 | 244 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ aee+ ++++++ +l+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F Sphfalx0002s0406.1.p 145 FCKTLTASDTSTHGGFSVPRRAAEEClpeldyTMNPPCQ-ELVAKDVHGVEWKFRHIYRGHPRRHLLTTGWSVFVSSKRLVAGDSVLFL 232 99*****************************97777785.9************************************************ PP E-SSSEE..EEEEE CS B3 84 ldgrsefelvvkvf 97 + ++++l+v+v+ Sphfalx0002s0406.1.p 233 R--GENEQLRVGVR 244 3..37777899997 PP | |||||||
2 | Auxin_resp | 114.1 | 1.3e-37 | 271 | 353 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha+++k F+v+Y+P+++tseFv++++k++ka+k++vsvGmRfkm+fe+eds err++Gt++g+ d+d vrWpnS WrsLk Sphfalx0002s0406.1.p 271 AAHAVTEKLRFSVIYHPSTCTSEFVIPYHKYLKAIKSSVSVGMRFKMRFESEDSTERRYAGTITGIGDVDAVRWPNSYWRSLK 353 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-40 | 138 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-39 | 138 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.02E-23 | 144 | 244 | No hit | No description |
SMART | SM01019 | 7.1E-23 | 145 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.196 | 145 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.6E-22 | 145 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-34 | 271 | 353 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.38E-11 | 690 | 772 | No hit | No description |
Pfam | PF02309 | 1.1E-5 | 692 | 730 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 29.221 | 694 | 777 | IPR000270 | PB1 domain |
Pfam | PF02309 | 5.6E-6 | 741 | 772 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MRSSSTGMTS QHISPPMSQC PLPSSCDSSP ADISGNDELD SEFWHACAGP LISLPVVNSL 60 VVYWPQGHLE QVANSTPQAS SVLSPIPQYD LPPHILCRLT GITLMAHPDT DKVYAQMDLT 120 PVRESEKPSV SEEPPPPAKR KSYSFCKTLT ASDTSTHGGF SVPRRAAEEC LPELDYTMNP 180 PCQELVAKDV HGVEWKFRHI YRGHPRRHLL TTGWSVFVSS KRLVAGDSVL FLRGENEQLR 240 VGVRHALKQQ QDSQSMVVSN QSTYIGVLAT AAHAVTEKLR FSVIYHPSTC TSEFVIPYHK 300 YLKAIKSSVS VGMRFKMRFE SEDSTERRYA GTITGIGDVD AVRWPNSYWR SLKVEWDESM 360 ASGRHERVSL WEIESFNSVA TLPPPTSLGQ YPSQKRRLAR PTLESFHSTK LPRVLVHDKG 420 RLKMREDAEG ATSWRLSGRA VKSEDVLKAP VFGQDRTRAE GWPPMQQSEI CPGAGIRHDL 480 PRGDFTGVLT LEPSQRNVER EQEHLRLCVQ NYLREHQEHK DSFSPRLSST GYGKPECGGD 540 EMQISVNSSS ILDPAMKLSW TSKRPRLSSM PETEDLLSPA PIWPATLSSD LPDCAASSSH 600 LVGARGEFVP SWEDQDGQVL APTPPPARPQ CKLFGFALNA DTVPNPAPST EPPKDEEMDV 660 EHLSSGPTNS GGSNSQELAV KSGALTKVSP FPGRSFIKVY KQGEPGRALD LTRYKSYSEL 720 KHALEDMFSL HGQLESPANL WQLVYTDHEG DILLVGDDPW GEFCSCVRSL KIYSPAVEGG 780 SEDVVQADVQ DTRHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-126 | 36 | 380 | 16 | 359 | Auxin response factor 1 |
4ldw_A | 1e-126 | 36 | 380 | 16 | 359 | Auxin response factor 1 |
4ldw_B | 1e-126 | 36 | 380 | 16 | 359 | Auxin response factor 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 1e-126 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0002s0406.1.p |