PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0297.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 336aa    MW: 37540 Da    PI: 6.6387
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0297.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-18191245256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+ + ++s +++  LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0002s0297.1.p 191 RKKLRLSKEQSALLEESFKDHITLSPKQKSALAKQLNLRPRQVEVWFQNRRARTK 245
                           778899***********************************************98 PP
2HD-ZIP_I/II123.41.1e-39191280191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++lLEesF+ + +L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke +eLr 
  Sphfalx0002s0297.1.p 191 RKKLRLSKEQSALLEESFKDHITLSPKQKSALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKQCCETLTEENTRLQKELQELR- 278
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           ++
  Sphfalx0002s0297.1.p 279 AI 280
                           55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-18174241IPR009057Homeodomain-like
SuperFamilySSF466896.84E-18177248IPR009057Homeodomain-like
PROSITE profilePS5007117.022187247IPR001356Homeobox domain
SMARTSM003891.7E-15189251IPR001356Homeobox domain
CDDcd000861.02E-15191248No hitNo description
PfamPF000463.0E-15191245IPR001356Homeobox domain
PROSITE patternPS000270222245IPR017970Homeobox, conserved site
PfamPF021836.7E-10247280IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.9E-22247290IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLLAEGKERF RNELRSSMRV MADDHSGGAC SLGLQMDLGL MLQRGHDENY SDPPRQCPVQ  60
LDLLQPLMRP SDSSSGTPPD PSSTNNTTFS WQHHWNGSRT NSGSGYNDGE VETYSSGGHG  120
TSPRGIDINQ LPSTTECEEE TVLSTSSPSS IGMMKRGRQE KCFHEFDLER ERVCDLSSRG  180
GSDDEDGGTT RKKLRLSKEQ SALLEESFKD HITLSPKQKS ALAKQLNLRP RQVEVWFQNR  240
RARTKLKQTE VDCELLKQCC ETLTEENTRL QKELQELRAI KATAPHVMAH DFHMPLPAAT  300
LTMCPSCERV TTLDNQSVNF TKPKYPHFSH SPAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189195TRKKLRL
2239247RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.11e-133homeobox-leucine zipper protein HAT4-like
TrEMBLA0A2R6WPH01e-133A0A2R6WPH0_MARPO; Uncharacterized protein
STRINGPP1S42_217V6.11e-133(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-60homeobox from Arabidopsis thaliana