PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0002s0267.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 1023aa MW: 112133 Da PI: 6.569 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.6e-08 | 546 | 567 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 Cr+f + G+C++G+ C+F H+p Sphfalx0002s0267.1.p 546 VCRYFVQ-GYCSRGEACPFLHSP 567 6**9999.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.6E-5 | 542 | 567 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-7 | 544 | 566 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 546 | 568 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 546 | 567 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 546 | 566 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50303 | 98.66 | 679 | 1022 | IPR033133 | Pumilio homology domain |
Gene3D | G3DSA:1.25.10.10 | 1.5E-120 | 692 | 1018 | IPR011989 | Armadillo-like helical |
SuperFamily | SSF48371 | 1.11E-106 | 699 | 1017 | IPR016024 | Armadillo-type fold |
CDD | cd07920 | 1.04E-146 | 700 | 1017 | IPR033712 | Pumilio, RNA binding domain |
SMART | SM00025 | 1.6E-6 | 703 | 738 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 9.364 | 703 | 738 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 3.7E-6 | 704 | 737 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 1.7E-10 | 739 | 774 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 12.537 | 739 | 774 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 1.0E-10 | 739 | 773 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 0.0013 | 777 | 813 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 9.271 | 777 | 813 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 7.2E-6 | 778 | 807 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 1.6E-6 | 814 | 849 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 10.017 | 814 | 849 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 6.6E-8 | 817 | 848 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 0.0071 | 850 | 885 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 8.711 | 850 | 885 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 3.1E-5 | 854 | 879 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 0.21 | 886 | 921 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 9.317 | 886 | 921 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 1.1E-5 | 890 | 909 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 5.1 | 922 | 957 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 8.711 | 922 | 957 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 8.501 | 958 | 996 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 8.1 | 960 | 996 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 4.721 | 997 | 1022 | IPR001313 | Pumilio RNA-binding repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1023 aa Download sequence Send to blast |
MEQDDEEFEQ LLGEIPHVTS TNSVIDVIPR ATSAPPHLEE VQRVRGSSAA AVEEGASSGG 60 GKCGGEDDDD EATPHMLQPF VDIRCDEHYE SFYRSYAGVK KLPPPMDNRT LYSDFPVLSP 120 KASSTHISPF LAELLPLDDD VPSHRSSQRK QQRSDMQRKQ QQDALQQHQI TSQLQAAQQQ 180 QHREPSPNFQ APAGAHQYGA LSENDMSSNM SSDPHLTAAF GKLGFDEGGS NSLLQSLIDD 240 AGDNNRPIIS NGSSAAGGGL VGRPPLSNGH GLNGSNGLYA HHMDTFGTGS TASYDLYASR 300 SSPSLDLFQG KRLVSMNGLG NGSGSYDGMS DYAAEVSTEA LKKAFRQQNS PGGYGSGGAS 360 QYQQQQQQLE VVAATMQAAA RSQSAGATGN ILHSGRVQKQ TPFDYTVTDY FEAQAQAQAT 420 ATAAQYAQLE EQQQQQQQRL YIQQQLIERQ KQIQLLASLQ AQVNGKPGRD TYHPSGGRIP 480 VRGSRNSSDL QQLGFAAANA QHNEALQRKL RLHQSVNPDT VWGSNVDVSE FGLSENSRRV 540 PTVGSVCRYF VQGYCSRGEA CPFLHSPLQG MKAVSHTASV PVKEAFRATA TRDGRLPPYL 600 DKYLRRSLQE SHSGKANSFA PASGVQRISD VVSNGHANGH GYPNGHFSLG SGYVPPSPTD 660 VSDTLAHPQS RIQDHMEFDV GWQLIAPHNL QQQQPPKYTT LEEVEGHIYL IAKDQHGCRF 720 LQKKFDEGGP EDVEKIFREI ISHITELMKD PFGNYLVQKL LEVCDEKQRM EILHAVTMDG 780 ELVSISLNMH GTRAVQKLIE TLKSPEQVAM VIKALADGVV ELIKDLNGNH VVQRCLQKLS 840 HEDNQFIFDA AASHCVEIAT HRHGCCVMQR CVDFAIDHQR QHLVAEVAAN ALTLSQDPYG 900 NYVVQYILDL KTAWSSTEVM GRLEGNYAFL SMQKFSSNVV EKCLKLGVEE SRSRLVRELT 960 TSPHLGQLLQ DQYANYVIQS ALSVCKQGAL HAGLVEAIRP HLPALRNSPY GKRILSRTNP 1020 KK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3bwt_A | 4e-76 | 701 | 1015 | 8 | 328 | Protein PUF4 |
4dzs_A | 5e-76 | 700 | 1015 | 29 | 350 | Pumilio homology domain family member 4 |
4dzs_B | 5e-76 | 700 | 1015 | 29 | 350 | Pumilio homology domain family member 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375670.1 | 0.0 | uncharacterized protein LOC112282379 | ||||
TrEMBL | A0A2K1KID3 | 0.0 | A0A2K1KID3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S41_292V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0002s0267.1.p |