PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0095.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 501aa    MW: 54632.1 Da    PI: 6.3645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0095.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11437482655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L++++P+      k  + +e+L +AveY+ksLq
  Sphfalx0002s0095.1.p 437 SIAERVRRTRISDRMKKLQQVVPNM----VKQTNTSEMLDEAVEYVKSLQ 482
                           689*********************7....4679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.195431481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-13434496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-10435485No hitNo description
Gene3DG3DSA:4.10.280.101.5E-13436496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11437487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8437482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MKDSSPQVAA AAAARPGRTG HPSPSQQQQQ RWTPLLQLAA GEEKTVFQQQ QLELGTVKSE  60
VIDSNINMGR RFSDYPMNVG HVILECPAPP PPPPVHHGST SFLNPPALLM PTTSTNGFQR  120
YHSAPSSLLH SLCSLDNYED LHHGSFPQAS GTALDSCRSR ISTSLMPPGF FSDGHLTAIT  180
EQMIDTSDQK LTNTGTATNL ETEYDQYMCN MNPTNFGRRA ALSAAAMIEQ QSGKSELANW  240
QVPSDDVLLS EDPFETMFPS LKNRSSHNNN AHQLRDAARQ LDVDESNTCS PTTLGMAGHS  300
MMSSEDQESN ISGTSEDANY GSYGSQAPAM FSRDDSFLLS DTLTSLEFLP TSHTGDMSGK  360
HHYGIELGES KMSCETTRGP MRSRPAGAVA GSLKRHMSLP VAAKTEMKSG LEDVAFVVSV  420
PSYGTRAKRG CATHPRSIAE RVRRTRISDR MKKLQQVVPN MVKQTNTSEM LDEAVEYVKS  480
LQKMVLELTN TVAELRGQNF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.18e-30bHLH family protein